barSeed - Barley Seed Development Database

Probe CUST_36260_PI390587928

Source Contig U35_42999

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36260_PI390587928	Hv_44K_v2	TACTCCACCATGGACCACAGCAAGGACAGCTACGCCTACGGGCACAGCGTCAAGGAGGTG	277	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353813	1787	2e-24	860 - 919	100	60 / 60	plus	ABC39095
MLOC	MLOC_42949.1	951	2e-24	834 - 893	100	60 / 60	minus	ABC39095
JLOC1	JLOC1_27752.1	1076	8e-25	95 - 154	100	60 / 60	plus
Harvest21	ABC39094	613	3e-25	278 - 337	100	60 / 60	plus
Harvest35	U35_42999	613	3e-25	278 - 337	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_42999 613 Hv_44K_v2
GGCCACGCCCCCGCCGCCGCCTTCCTCCTCGGCCTCCTCCTCCTCCTCCAACGTCCACTC
CGCCGTCACCGTCGCCACCACCACCACCTCCCCCGCGCCGTCCTACCACCGCCACGCCGC
CACGACTCACGACGCGGCACCCTACCACGCGCTCTACGGCGGCCCCTACGCCTCCGCCGG
CCGCCAGCAGCACGGGAGCGCCTACCACCACGCCGCGCAGGTCAGCCCGTTCCACCTGCA
CCTCGACACCACCCACCCGCACCCGCCGCCGTCCTACTACTCCACCATGGACCACAGCAA
GGACAGCTACGCCTACGGGCACAGCGTCAAGGAGGTGCACGGCGGCGGCGAGCACGCCTT
CTTCTCCTCCGACGTCACCACCGACAGGGACCACCAGCACCACCAACACCACGGCAGCGC
CGGCGGCCACGGCCAGTGGCAGTTCAAGCAGCTCGGCGGCATGGAGCCGAAGCAGCACAA
CCCCACGTCGCTCTTCCCCGGGTGCGGCGGCTACGGCAACAACGCAGCGTACGCCATCGA
CCTGTCCGGCAAAGAAGAGGCCGAGGAGAAGGAGAGGCGGCAGCAGCAGCAGCACTGCTT
CCTGCTGGGCGCT

Homology of Contig U35_42999 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None