barSeed - Barley Seed Development Database

Probe CUST_36255_PI390587928

Source Contig U35_1904

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36255_PI390587928	Hv_44K_v2	GTTGCTGCGCAGCAGATATGTACTGGATTTGTATAATTGCAAGGTACTATCAAGAAAAAA	1835	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.252	3.773	1.079	0.952	0.505	0.492
Raw	69.218	105.798	24.146	35.279	5.694	5.878

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34834.1	2225	7e-23	2022 - 2078	100	57 / 57	plus	ABC09863
JLOC1	JLOC1_22501.1	2266	4e-23	2072 - 2128	100	57 / 57	plus
Harvest21	ABC09863	1932	1e-23	1836 - 1892	100	57 / 57	plus	ABC09863
Harvest35	U35_1904	1936	3e-25	1836 - 1895	100	60 / 60	plus

Contig Sequence (1936 bp)

>U35_1904 1936 Hv_44K_v2
CGTAAATCATCTTTCTCTATGGTTCTCAGCTTTCTCTGGCCAGGATGAACAACCTCTTAT
CAACACATCCACTCAAGTATACCCGGGAGCCACAGGCCCACAGCCCACAGACATTTCGCA
GAAATGAACAGGAGAAGGGCAGATGCACCCACCCAAAACCGTCTCCGTGCCTATATAACG
TGTCGACCGCGGAGCGAGTGCTCAACGCCATCTTGTGTGACGCCATCGCCGAGAGAGCAG
AAGCCACTCCAGTTAAGATGGCTCCGCTGATCACCGCCGACGTCGTGGTGGAGGCTGCGC
CGGCCCCGTCCATGGCCGTGCTAAACCAACTGGTTTGCGCGAGCGCGCCAACGCCGACCA
TCGCCGTGGTCTCCAAGCATCTGGTTCTGCCGGAGGGCGCTCAGCCGGTTGGAGACCTCA
AGCTGTCCGTCTCCGACATGCCCATGCTCTCGTGCCACTACATTCAGAAGGGCCTCTTCT
TCACGCCCGCGGGCATGCCGACTGCCCGCCTCGTCAAGTCGCTCTTGCTGTCGCTGTCCC
GCGCGCTCGGGGTGTTTCCGGCGCTCGCGGGACGGCTCGTCACGCTCCCCGACGACCGCA
TCGTCATCCGGTGCGACGACGCGGCCGTCGAGTTCTACCATGCGGTGGCGCCCGCTCTGT
CGCTCGCCGACTTCCTCGTGCCCGACGCCGACGTGCCTACCAGGCTGACGAAAGATCTGT
TTCCCATGGACCGCGTCGTCAGCTACGAAGGCCACCGCCGCCCGCTCACATCGTTTCAGG
TCACCGTGCTCGGCGACGGCGCTGTCTTTGTCGGCCTCGTCGCCAACCACGCCGTCGTGG
ACGGCACCTCATTTTGGCACTTCTTCAACACGTGGGCTGGGCTGTGCCGCGGCGAGCCAG
TCCAGCCACCGGACTTCAGCCGCAACTTCTTTGGCGGCTCCACGGCCGTCCTCCGCTTTT
CCGGACGCGACGGCCCTGCAGTGACGTTCGACGCCGCCGCTCCCCTCCGCGAACGAGTCA
TCCACTTCAGCGCTGCGGCAATTCGCGACCTGAAGGCGGCGGCCAACCGCTGCAGAAAGA
CCAACGAGGATGACGAGGTTAACGGCAAGCTCGAGCACGATCTGAAGGTCCAGGGGGGTG
GCGGACAGATCTCCTCTTTCCAGTCGATGTGCGCGCATATGTGGAGGGCCGTGACGCGGG
CGCGGCTGCAGTTGACTGCCGATGCGACGACAACGTTCCGCATGGCGGTGAACTGCCGGC
ACCGCCTGCGCCCGAAGATCTCCCCGGTCTACTTCGGCAACGCCATCCAGAGCGTGGCGA
CGACGGCGACGGTGGCCGAGCTGGCTTCNCACGACCTTGGGTGGGCGGCGGGCGGGGGTG
GCGCGACCGTGGTGGCGCACGAGGACGGCGCCATCCGGCAGGCCGCGGCGGACTGGGAGG
CGGCGCCCCGGTGCTTCCCGCTGGGGAACCCCGACGGCGCGGCGCTCACCATGGGGAGCT
CGCCACGGTTCCCGATGTACGACGGCAACGACTTCGGTTGGGGCAGGGCGGTGGCCGTGC
GGAGTGGCCGAGCAAACAAGTTCGACGGCAAGATGTCGGCGTTCCCCGGTCAAGCCGGGG
ATGGCAGTGTGGACGTGGAGGTGTGCCTCGCCCCGGACACCATGGGCCGCCTCCTCTCCG
ACGACGAATTCCTGCAGTTCGTGTCACATGCACCTTGATGGGGTGCACCGCATCTGGCTG
TCTTGTATGTTGTCCTACGGTACCAGCGCATAGGATGTGACATGGCTACCACTGATCGGT
GTGGTCGCCGGACATGTCACATGTGTGTAACACATGTTGCTGCGCAGCAGATATGTACTG
GATTTGTATAATTGCAAGGTACTATCAAGAAAAAAAAAAAAAAAAAGTCCTCTGTTAAAA
AAAAAAAAAAAAAAAA

Homology of Contig U35_1904 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g37660.1	481	0.0	protein\|transferase family protein, putative, expressed
Brachypodium v1_2	Bradi2g23740.1	495	0.0
Arabidopsis v10	AT2G39980.1	482	2e-140	HXXXD-type acyl-transferase family protein \| chr2:16688437-16689885 REVERSE LENGTH=482