barSeed - Barley Seed Development Database

Probe CUST_36248_PI390587928

Source Contig U35_1911

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36248_PI390587928	Hv_44K_v2	TGACAACTCTTGATGTAGTGAGAGCCAATACCTTTGTGGGAGAGGTTCTTGGACTTGATC	639	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.243	0.306	1.096	1.787	1.063	1.483
Raw	59.912	115.311	378.565	964.658	204.185	310.862

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368534	1398	2e-24	653 - 712	100	60 / 60	plus	ABC50845
MLOC	MLOC_73672.2	1349	2e-23	726 - 783	100	58 / 58	plus	ABC50845
MLOC	MLOC_73672.3	1437	2e-23	726 - 783	100	58 / 58	plus	ABC50845
MLOC	MLOC_73672.1	1472	2e-23	781 - 838	100	58 / 58	plus	ABC50845
JLOC1	JLOC1_49050.1	2012	1e-23	732 - 789	100	58 / 58	plus
Harvest21	ABC04719	1453	3e-25	640 - 699	100	60 / 60	plus
Harvest21	ABC04718	1331	3e-25	637 - 696	100	60 / 60	plus
Harvest35	U35_1911	1385	3e-25	640 - 699	100	60 / 60	plus

Contig Sequence (1385 bp)

>U35_1911 1385 Hv_44K_v2
GTCTCTTCTCTTCTCGTCTCTCGTCGCCTCCCGAGTCTCCGGCGACCACACACGCCACCG
CGACGGCCATGGAGCAAGGCGCCGACTCACCGGCGGCGAGGCGGATGGCGAGGGTCGCGT
CCCACCTCCGCCCGCCCACCTCGCAGATGGAGGAGGTTGCCATCTTGAAGGGCTCTAATT
GCCGTGCGAAAGGTGCAGCGCCAGGGTTCAAGGTCGCTGTCCTGGGTGCATCTGGTGGGA
TCGGCCAGCCACTCTCGCTGCTTATGAAGATGAACCCTCTTGTTTCGGTGCTCCATTTAT
ACGATGTTGTCAACACACCTGGTGTCACAGCTGACATTAGCCACATGAACACTGGTGCTG
TGGTGCGTGGCTTCTTGGGTCAGCCACAATTGGAGAGTGCTCTTACTGGAATGGATCTTG
TGATCATTCCTGCTGGCATTCCTCGGAAACCTGGGATGACAAGGGATGATTTGTTCAACA
TCAATGCTGGGATCGTTCGGACTCTTTGCGAGGGAATTGCAAAATGCTGCCCAAATGCGA
TTGTGAACGTGATCAGTAACCCTGTAAATTCCACAGTTCCGATTGCTGCTGAAGTATTTA
AAAAAGCTGGAACATATGATCCTAAGCGCCTATTGGGGGTGACAACTCTTGATGTAGTGA
GAGCCAATACCTTTGTGGGAGAGGTTCTTGGACTTGATCCCAGAGATGTCAATGTTCCTG
TTGTTGGCGGGCATGCAGGAGTTACGATATTACCACTCCTTTCACAGGTGAATCCTCCCT
GTTCGTTTACCTCAGAAGAAATTAGTTATCTCACTTCTCGCATACAGAATGGTGGGACAG
AAGTAGTTGAGGCGAAAGCGGGGGCAGGATCCGCAACTCTTTCCATGGCCTACGCAGCAG
CCAAATTCGCGGACGCCTGCCTGAGAGGGCTGCGCGGCGACGCCGGGATAGTCGAGTGCT
CGTACATAGCCTCTCAGGTGACGGAGCTGCCCTTCTTCGCGTCCAAGGTGCGGCTGGGCC
GGGCCGGCGTCGAGGAGGTCCTGCCGCTCGGCCCGCTCAACGAGTTTGAGAGGGCCGGGC
TGGAGAAGGCCCAGGGCGAGCTGGCCGAGAGCATCCGCAAGGGCGTCGCGTTCGCCAACA
AGTGATGAAGAGAAGGATCTAAAAAAAAAAAAGTGATGAAGAGAAGTGTATTCAGCTGCG
TATTCTTGGCCCCCCCAGCATAGAAATCTGAGATGCCTTTTGCTTCCGTCTGCTCCTGCC
TGGGAGCAACGGTCGCCGTGTGATGTGATATCCCTGTATATCGTATAATAACAATAACAA
TAATAATGAAGTGTACTGTATTTTATACTGGAAAAAAAAAAAAAAAAATACGATGCGGAC
TACCC

Homology of Contig U35_1911 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g43630.1	357	protein\|lactate/malate dehydrogenase, putative, expressed
Brachypodium v1_2	Bradi4g00910.3	360
Arabidopsis v10	AT2G22780.1	354	\| Symbols: PMDH1 \| peroxisomal NAD-malate dehydrogenase 1 \| chr2:9689995-9691923 REVERSE LENGTH=354