barSeed - Barley Seed Development Database

Probe CUST_36247_PI390587928

Source Contig U35_1912

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36247_PI390587928	Hv_44K_v2	CGATGATGATATCTGTTGGAATTGAACACGAGCTGGGCCGACCCGTTAACATGTAAAAAA	1660	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.175	0.262	0.717	1.522	1.254	1.523
Raw	424.548	938.503	2418.727	7687.527	2284.033	3016.760

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375693	1723	9e-22	1652 - 1706	100	55 / 55	plus	ABC05320 ABC41085 ABC47039
MLOC	MLOC_57585.3	2155	9e-22	150 - 204	100	55 / 55	minus	ABC05320 ABC41085 ABC47039
MLOC	MLOC_57585.2	1765	9e-22	150 - 204	100	55 / 55	minus	ABC05320 ABC41085 ABC47039
MLOC	MLOC_57585.1	2083	9e-22	152 - 206	100	55 / 55	minus	ABC05320 ABC41085 ABC47039
JLOC1	JLOC1_37345.5	2097	5e-22	1858 - 1912	100	55 / 55	plus
JLOC1	JLOC1_37345.4	1896	5e-22	1657 - 1711	100	55 / 55	plus
JLOC1	JLOC1_37345.3	1902	5e-22	1663 - 1717	100	55 / 55	plus
JLOC1	JLOC1_37345.2	2459	5e-22	2220 - 2274	100	55 / 55	plus
JLOC1	JLOC1_37345.1	1849	5e-22	1610 - 1664	100	55 / 55	plus
Harvest21	ABC05320	1724	3e-25	1650 - 1709	100	60 / 60	plus	ABC05320
Harvest35	U35_1912	1795	3e-25	1661 - 1720	100	60 / 60	plus

Contig Sequence (1795 bp)

>U35_1912 1795 Hv_44K_v2
CTGTCCCTGTGGGAGGAAAGGGACGAGGAGCCTGCCGCCAAGCCACCCCAGCCCCCAACC
CAACCCACAGAGGCCACACACGGCGGCTCATCATGGCTCCCTCCTCCACCTCGCGCCCCT
CCGTCGCCGTCCTCATCCTCCTCCTCTCCGGCGTCCCGGCCAGCCTCCTCGCCACGGCCC
CCGTCTCCGACGGGCCGGAGCAGCAGCCAGGAGGAGGGGATGGCCTGTACAGGGAGATTC
TCAGGGACGAGACGGTCCTCCGGCTCAACCAACTCGGCAAGATATCTGATGGCGAAGGGT
TCCTCGAAAGGACGTTCCTGAGTCCTGCTTCCTTCAGAGCCACTGATGTCATTATCGGCT
GGATGAAAGATGCCGGACTTACGACGTGGGTTGATCAAATGGGTAACATTCATGGCCGAT
TTGAACCGTCCAATTCGACAGAGAAGGCTTTATTGATTGGATCCCATATGGATACTGTCA
TTGATGCTGGCATGTACGACGGAGCCTTGGGTATTATATGCGCAATCTCTGCTCTGAAGG
TTTTGAGAGTCACTGGAAAACTTCAGAGGCTCACTAGACCAGTAGAGGTGATTGCATTCA
GCGATGAGGAGGGAGTTAGATTTCAGACGACGTTTCTCGGAAGCGCCGCTGTAGCTGGTA
TTCTACCTGAATCAATTTTGCAAGTATCTGACAAGAGTGGCACTACAGTTCAAGATGTTC
TTAAGTTGAACTCATTTGAGGCTACTGCTGCTGCCCTTGGTCAAGTCAAGTACAGCCCGG
AGTCGGTGGGGAGTTACGTTGAGGTTCACTTGGAACAAGGGCCTGTCCTGGAAGCCCTCC
GTTATCCCCTTGGCGTCGTAAATGGAATCGCAGGGCAGACGCGATTGAAGGTAATAGTAG
ACGGTTCCCAAGGGCATGCTGGGACGGTTCCAATGAAATTGCGCCGTGATCCGATGGTTG
CAGCTGCAGAGCTGGTGGTGACACTGGAGAGCCTGTGCAAAGAGCCGAGCAGGTTCCTGA
CCTACGACGAGGACTGCGGCTGCTTCACCGAGGAGTCCCTCGCCGGCCTCGTCTGCACCG
TCGGCGAGCTGCTCACCTGGCCCAGCGCCAGCAACGTCATTCCAGGCCAGGTGAACTTCA
CGGTGGACATACGCGCCATGGACGACCAGGTGCGGGAGACGATCGTGGCCAGCTTCTCGA
GGATCGTCATGCAACGGTGCGACCACCGGCTGGTCGACTGCGCCGTCGAGCACAAGCACT
CGGCGGCGGCCACGCCGTGCGACCCGGAGCTGACGGCCGAGCTGAAGCGCGCGACGCGGT
TGGCGGTCTCGGCGATGGCGCCCGGCGTCCACGGGCACGGCCATGCGGGGACGGCGACGC
CGGTGCTGATGAGCGGCGCGGGGCACGACGCGATGGCGATGGCGCGGCTGACGCGGGTGG
GGATGCTGTTCGTGCGGTGCCGCGGCGGCGTGAGCCACTCGCCGGAGGAGCACGTGGCGG
AGGACGACGTGTGGGCCGCCGGCGTCGCGCTGCTCCGCTTCGTCGAGCAGCACGCGGTCG
CCGAGCTGTGAGATGTGTGAATGTGATTGGTCAGTGCCTCCGAAATGTACATATGGACTG
GACTGGACGGGCGTCCCATTGGGCCGAATAAACGGGTCTCCGATGATGATATCTGTTGGA
ATTGAACACGAGCTGGGCCGACCCGTTAACATGTAAAAAAAAAAAAAATTTTACAAACCT
TCCAGAGATTGTTGAAACTAGTAGTCATAGACGTGCGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1912 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g45480.1	492	protein\|hydrolase, putative, expressed
Brachypodium v1_2	Bradi1g31890.1	496
Arabidopsis v10	AT4G20070.1	525	\| Symbols: ATAAH, AAH \| allantoate amidohydrolase \| chr4:10861548-10864529 FORWARD LENGTH=525