barSeed - Barley Seed Development Database

Probe CUST_36241_PI390587928

Source Contig U35_1918

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36241_PI390587928	Hv_44K_v2	TGGGGGTGCCGCCACTGGTTGTGGTGAAACATAAATAACGTGATATGCCGTGCTTGTATG	1110	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.097	0.205	0.356	2.300	5.299	8.987
Raw	73.172	247.098	371.043	3837.717	2918.843	5407.993

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5179.2	1184	2e-24	1122 - 1181	100	60 / 60	plus	ABC04461
JLOC1	JLOC1_3315.1	1376	8e-25	1125 - 1184	100	60 / 60	plus
Harvest21	ABC04461	1393	3e-25	1111 - 1170	100	60 / 60	plus	ABC04461
Harvest35	U35_1918	1192	3e-25	1111 - 1170	100	60 / 60	plus

Contig Sequence (1192 bp)

>U35_1918 1192 Hv_44K_v2
GGGAAGCAGAAGCAGCTCTCCAGTCCACAGTCTAGGAGCTTTCTCCACGATTCCACCCAC
GGTTCATCGGTCGCCGCCCGGTTCTGGTGCGCCGCAAGTAGCAGAGCGGCGGAGATGGCC
ACCAAGGCGCGCAAAGTCGAGGTCCGTGACGCGAGCAGGGCGGAGGGGAAGGGCGACGCC
GCGGACGTCCACGTCCTCCGTGAGGCGATGAGGGCCGACGGGAAGGGCGACCACGACACC
GCCGGCGGCCCGAACAGGGCGGACGGGCATGGCGACGCGGGCGGCAGGGTCGGGGACTCC
CGGGGCGTCGACGGGAAGGACTCTCTGAAGATGGTCGCGCTGCAGGCGCCGGTCACCGTT
GAGCGCCCCGTCCGCGGCGACCTCGAGGAGCACGTCCCCAAGCCCTATTTGGCGAGGGCT
CTGGCGGCGCCGGACATGTACCACCCGGAGGGGACGACGACGGATGACCACCAGCACCAC
AACATGAGCGTGCTGCAGCAGCACGTCGCCTTCTTCGACCGCGACAACAACGGCATCATC
TATCCCTGGGAAACTTACGATGGATGCCGTGCGGTTGGGTTCAACGTGTTCATGTCTGCC
TTCATCGCGTTTCTGGTGAACCTGGTCATGAGCTATCCCACCCTGCCCGGGTGGCTGCCG
AACCCCCTCTTCCCGATTTACGTCCACAACATCCACAAGAGCAAGCACGGAAGTGATTCG
GGGACCTATGACAAAGAGGGCCGGTTCATGCCGGTGAACTTCGAGAACATCTTCAGCAAG
TACGCCCGCACGTACCCGGACAGGCTGAGCTACAGGGAGATGTGGCGGATGACGGAGGGG
TGCCGGGAGGTGTTCGACTTCTTCGGCTGGGTGGCGATGAAGCTGGAGTGGTCGATCCTG
TACGCGCTGGCGCGGGACGACGAAGGGTACCTGTCGAGGGAGGCCATCCGGCGCATGTAC
GACGGCAGCCTCTTCGAGTACATGGAGAGGCAGCGCATGGAGCACGTCAAGATGTCCTAG
TTCATATTCGGGTACTGTGAGGTGTGAGCTGTATACGCGACGGTGGATCTCAGTTGGTGT
AGCGTATGTACAACAGACCACAGATCAATGTGGGGGTGCCGCCACTGGTTGTGGTGAAAC
ATAAATAACGTGATATGCCGTGCTTGTATGTTTAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1918 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43170.1	286	3e-143	protein\|caleosin related protein, putative, expressed
Brachypodium v1_2	Bradi5g15410.1	299	1e-152
Arabidopsis v10	AT5G55240.1	243	1e-103	\| Symbols: ATPXG2 \| ARABIDOPSIS THALIANA PEROXYGENASE 2 \| chr5:22405963-22407158 FORWARD LENGTH=243