barSeed - Barley Seed Development Database

Probe CUST_36231_PI390587928

Source Contig U35_1929

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36231_PI390587928	Hv_44K_v2	ATGTATTTTGCACAGCAAGCAACTGCTGGAGCTTTTGTCAAAACAAAGATGTAACACTTT	1213	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5942.1	4097	2e-24	2823 - 2882	100	60 / 60	minus	ABC04491 ABC05120 ABC05121 ABC42371
MLOC	MLOC_5942.2	4378	2e-24	1788 - 1847	100	60 / 60	minus	ABC04491 ABC05120 ABC05121 ABC10124 ABC42371
MLOC	MLOC_5941.2	6166	2e-24	1689 - 1748	100	60 / 60	minus	ABC04491 ABC05120 ABC05121 ABC10124 ABC42371
JLOC1	JLOC1_3859.2	5260	8e-25	2548 - 2607	100	60 / 60	plus
JLOC1	JLOC1_3859.1	3693	8e-25	981 - 1040	100	60 / 60	plus
JLOC1	JLOC1_3858.1	2876	8e-25	1673 - 1732	100	60 / 60	minus
Harvest21	ABC05120	1301	3e-25	1208 - 1267	100	60 / 60	plus	ABC05120
Harvest35	U35_1929	1326	3e-25	1214 - 1273	100	60 / 60	plus

Contig Sequence (1326 bp)

>U35_1929 1326 Hv_44K_v2
ACTCCTTCCATCTACTCTCTCACACTCAGAGAGGGAGGAGAGAAGGGAGCACTCCGCCGC
CGCCGGCTGCTGCTCCACAACCCACGAAGCTAGGCAGATAGGCATGGCGGCTACCAGCGC
GAGTGCCGCTGCCTCCCTCTCCGTCACGGCTGCCGCTCACCGCCTCAGGCACCGGCAGCT
ATGTGCTTGCGCACGTGGGCCGGCGGCGCGACCGCATCCCCTCCTCAAGCTGAACCGCCG
CAGCTACGCGGCTTCGGCATCGTCCGCGGCGGCCATGTCTCCTCTGTCCCGGTGGGAGGG
CCAAGGCATCCGAGCGGAGTTGGATGCGCCGGGAGGAGTGGCCAGCGGTGACGTCATGGG
CCTTCTTCTCCGGGAGCGCATCATCTTCCTCGGCAACGAGATCGAGGACTTCCTCGCCGA
CGCCGTCGTCAGCCAGCTCCTCCTCCTCGACGCCATGGACTCCGAATCTGACATCCGGCT
CTTCGTCAACTCCCCCGGTGGATCACTCAGTGCGACAATGGCTATCTACGATGTAATGCA
GCTGGTGAGGGCAGATGTATCCACTATTGGAATGGGCATAGCTGGATCCACAGCTTCTAT
ACTCCTTGGTGGTGGCGCAAAGGGCAAACGGTTCGCCATGCCCAACACCAGGATTATGAT
GCATCAGCCCGTGGGAGGCGCGAGTGGCCAGGCCTTGGATGTAGAGGTCCAAGCCAAGGA
AATTCTGGCTAGCAAGAGGAATGTCATCCGGCTGATATCAGGCTTTACGGGACGCACACT
GGAGCAGGTAGAGAAAGACATCGATAGGGACCGATACATGGGTCCTCTTGAGGCCGTGGA
TTACGGGATCATTGATGGTGTGATTGACGAAGACAGCATCATCCCACTTGAGCCGGTTCC
AGAGAGGGTGAAACCTAAATACAACTATGAGGAAATGTACAAGGACCCTCAGAAGTTTCT
TACGCCGGATGTCCCAGATGATGAGATATACTAAGCTAGCCTGTCAGTCATATACTAAGC
TAGCCTGTCAGTCATCTGTATTTCGAACCAGGCAGTCGCTGGAGCTTTCATCGAACAAAG
ATGATGTAATCCTTAGCAGTAGACTTTATCTGCCGTTGCATTTGGTGTGATGGTGTAGCT
GTTGTGTTCTGGCATTTGACCAAGCAAATGAAAGCGCATGGAACATACAACTGGTCTAAC
CAGCTAGCCTCGCATGTATTTTGCACAGCAAGCAACTGCTGGAGCTTTTGTCAAAACAAA
GATGTAACACTTTTTTTTAGTACGAGTAGTAGACTTTGTTGGCCGTTGCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_1929 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g43050.1	294	4e-141	protein\|OsClp11 - Putative Clp protease homologue, expressed
Brachypodium v1_2	Bradi3g21620.1	295	1e-161
Arabidopsis v10	AT5G45390.1	292	5e-114	\| Symbols: CLPP4, NCLPP4 \| CLP protease P4 \| chr5:18396351-18397586 FORWARD LENGTH=292