barSeed - Barley Seed Development Database

Probe CUST_36225_PI390587928

Source Contig U35_1935

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36225_PI390587928	Hv_44K_v2	CCTGCTAGACTTTGCTTATTCAACTACCGAATTGAAAGAGTATGATTTGCGTAATTGATT	2788	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.587	1.777	1.201	0.751	0.310	0.351
Raw	9063.367	15763.170	9341.203	9265.973	1313.105	1644.593

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48527.2	1365	2e-24	1246 - 1305	100	60 / 60	plus	ABC05327 ABC41008
MLOC	MLOC_48527.1	1679	2e-24	1609 - 1668	100	60 / 60	plus	ABC05327 ABC41008
JLOC1	JLOC1_31154.1	2194	8e-25	2100 - 2159	100	60 / 60	plus
Harvest21	ABC05327	2574	4e-24	2498 - 2555	100	58 / 58	plus	ABC05327
Harvest35	U35_1935	2907	3e-25	2789 - 2848	100	60 / 60	plus

Contig Sequence (2907 bp)

>U35_1935 2907 Hv_44K_v2
CACAAAACCCTACCCTACCCCTCTTCCAAAACCCTCGCATCGTCGTCTTCCTCGGTCAGC
CCACCTGCGCGAGCGCGCCTCCGGCCTACATCTCTCGCCCTCGCCTGGGAGGAGAACCAG
CAGAGCGCAGCGGATATGCTCGGGGCCTCGAGGCGATCCCTCTGCGCCGGCGCCGCCGCC
CGCCGTCACGCGGCCGCCTTCGCGGTCTCCGGAGACGCCGCCGCCGCCTCCTCCTCCTCC
TCCCCCTTGGCCCCTGCCCCGGCCCCGCCGCGTTCGGTGACAAACTCAAAGCCTGGTGTT
TCTCGGCTTGGAGGGAAGAGGTTGCTCTCTGTGCTTGCGGCTCCCAAGCTTAATGTAGGT
GAAAGCTTGCCGTCCCTCAAGCTAAGGGAGAATGCACTTGTTGGGAGACGCTATGAATCG
AGTGCTGCAGCAGTTGATTCATCTGATGCGCCACCTGCCGAGAAGTTTGAGTATCAGGCT
GAGGTCAATAGGCTCATGGATTTGATTGTGCACAGCTTGTATAGCAACAAGGAGGTGTTT
CTCCGGGAGCTGGTCAGCAATGCAAGTGATGCACTTGACAAATTGCGCTATCTCAGTGTC
ACTGATCCTGATCTTCTTAAGGATGGCCCTGAACTTGACATTCGCATCCAAACAGACAAG
GACAATGGAATAATAACAATTACTGATTCTGGGATTGGTATGACGAGGCAAGAACTTGTT
GATTCTCTTGGAACTATTGCAAGCAGTGGAACTGCTAAGTTCCTGAAGACATTAAAGGAG
AGCCAGGAAGCTAATGTTGATAGCAACTTGATTGGCCAATTTGGTGTTGGTTTCTATTCG
GCATTTCTTGTTTCAGACAAGGTTGCTGTGTCAACAAAGAGCCCAAAATCAGAAAAGCAA
TATGTTTGGGAAGCAGAAGCAGAATCTAATTCCTACACCATTCGAGAAGAGAAAGATCCA
GAGAAGCTCATTCCTAGGGGAACTCGACTTACACTTTACCTGAAGCGTGATGACAAGGGT
TTTGCTCACCCTGAGAGGATTCAAAAACTTCTGAAGAATTACTCTCAGTTTGTTTCCTTC
CCAATTTACACTTGGCAAGAGAAGGGCTTTACAAAAGAGGTTGAGGTTGACGAGGATCCT
GCTGAAGTTAAAACAGAAGATGATGGTGAAACCAAAAAAGAGGTTAAAAAGAAGACAAAA
ACCGTTGTGGAGAAGTATTGGGACTGGGAACTTACAAATGAAACACAACCTATTTGGCTT
CGGACTCCTAAGGAGGTATCAACTGAGGAGTACAATGAATTTTACAAGAAGACCTTCAAT
GAGTATTTGGATCCCTTGGCCTCCTCACACTTCACTACAGAGGGTGAAGTAGAATTCAGG
TCAATTCTGTATGTGCCTGCTACAAAGAAAGAGGACATAACTGATAGGAAGACTAAAAAT
ATCAGGCTTTATGTCAAGCGCGTGTTCATATCAGACGACTTCGATGGAGAACTTTTCCCA
AGATACCTGAGCTTTGTGAAGGGTGTTGTTGACTCAAATGACCTTCCCCTAAATGTTTCT
CGTGAGATACTTCAAGAGAGTCGAATTGTGCGTATAATGAGAAAGAGATTGGTGCGGAAG
GCCTTTGATATGATACTTGGCATTTCTTGTAGTGAAAACAGAGACGAATATGAAGCATTC
TGGGAGAACTATGGCAAATTTTTAAAGCTCGGTTGCATGGAAGACAAGGAAAATCACAAG
AGAATTGCTCCTTTGCTCCGTTTCTTTTCTTCTCAAAGCAATGAGGAATTAATTAGCTTG
GATGAATATGTCGAGAATATGAAACCAGAGCAGAAGTCCATTTATTACATTGCTGGAGAT
AGTTTGAGCAGTGCCAAAAATACTCCTTTCTTGGAGAAGCTCAATGAAATGGATTATGAG
GTTTTACTTTTGATTGACCCTATGGATGAAGTGTCTCTTACAAATCTGAACTCCTACAAG
GATAAGAGTTTTGTGGATATTAGCAAGGAAGACCTGGACCTAGGTAATAAGAATGAGGAA
AGAGAAAAGGAATTGAAGCAGGAATACAGTCAAACCTGTGATTGGATCAAGAAACGTTTG
GGTGAGAGGGTTGCTCGAGTTGATGTCTCCAACCGTCTCAGCTCATCACCATGTGTTCTA
GTTGCAGCCAAGTTTGGTTGGTCAGCCAATATGGAAAGGTTAATGAGGGCGCAGTCTATA
GGTGATACGTCGTCTCTGGATTTCATGCGGTCCAGGAAAGTATTTGAAATAAATCCAGAG
CATGAGATAATCAAGCGACTGAATTCTGCGTGCAGAAGCAACCCTGATGACCCGGAAGCT
CTGAAGGCAATCGACATCCTCTTTGAAACTTCAATGATTTCTAGCGGCTTTACACCTGAT
AACCCAACTGACCTGAGCGGGAAGATCTATGACATGATGAGTACAGCTATGGCGGGCAAG
TGGGCGTCGCAGCCCCAACCTGCCCAGCCAAGCCAGCAACCTGCCGCACCTAGTAGCCCT
GAACCTGAGCCGCTTGAAGCCGAGGTGGTGGAACCAGTCGAGGCTGGCCAGCAGAAATGA
GAATCCGCATCGTGGGAATCCATCGTGGGTTGATATCAAGTGCATACGCGGGTGCTATCC
CACGCTCTCTGCTTGTTCCTTTTTATTATTTCGGAATCCGTTTACACGGCATGTATGACG
AGCCGTGCGAGTGCCAGCATACACTTAATCCTAGATAGGGTTGTGGTAATACTAGTAATA
ATAAAACATTTTGGCCTTGAACACGCTGCCTGCTAGACTTTGCTTATTCAACTACCGAAT
TGAAAGAGTATGATTTGCGTAATTGATTATTTGAAAAAAAAAAAAAAAAAAAATCGTGGT
GGTACAGTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1935 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g32986.1	812	protein\|heat shock protein, putative, expressed
Brachypodium v1_2	Bradi4g06370.1	814
Arabidopsis v10	AT3G07770.1	799	\| Symbols: Hsp89.1, AtHsp90.6, AtHsp90-6 \| HEAT SHOCK PROTEIN 89.1 \| chr3:2479611-2483970 FORWARD LENGTH=799