barSeed - Barley Seed Development Database

Probe CUST_36223_PI390587928

Source Contig U35_1937

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36223_PI390587928	Hv_44K_v2	CATTTTTTGAAATCAAACAGCAGGGTAAAGAAACACACACGGTTGCATGAGCCCAAAAAA	1370	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.499	1.671	1.052	0.902	0.542	0.492
Raw	333.540	554.121	319.707	426.162	89.865	88.864

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC06976	632	3e-25	562 - 621	100	60 / 60	plus	ABC06976
Harvest35	U35_1937	1441	3e-25	1371 - 1430	100	60 / 60	plus

Contig Sequence (1441 bp)

>U35_1937 1441 Hv_44K_v2
CTCTCTCCCCCGCTCCGCTTCATCCCACCGCCTGGACTGGACGCCTCCGTCTGCTCCTCC
GTGCCCCATCCATCCGCATCCGCATCCGCATCCGCCACCGTCCTCCACGCCCTCCGGTGC
GCATGATTCAGTAGGCAACGAGCTCCTCCTCCTCCTCCTCCTCAGCCCCACACTTCCCGG
ATCCTCGTCGCCCCGGCCGAGCAGAGACCGGAGCCCCGCCGCAGATCCGCAGGGAAGAAT
GGACGCCCCGTCGGTGGCGCTGTACAGCCAGCTAAAGGCTGCTCAACCATTCTTCTTGTT
TGCTGGGCCCAATGTGATTGAATCAGAGGAACATGTCATGAAGATGGCCAAACACATCAA
GGCCATCACAACCAAACTTGGGGTACCTCTTGTGTTCAAATCAAGCTTTGATAAAGCAAA
CCGTACATCGTCGAAATCCTTCCGTGGTCCTGGTCTGGAGCAAGGCCTAAAGATCCTTGA
AAAGGTGAAGGCCGCATATGACCTTCCAGTGGTCACCGATGTGCATGAAAGCTCCCAGTG
TGAAGCTGTTGGAAGAGTTGCTGATATTATACAGATTCCAGCTTTCCTCTGTCGCCAGAC
TGACCTTCTAGTGGCTGCGGCTAAGACTGGGAAAATTATCAATATCAAGAAAGGACAATT
CTGTGCTCCGTCTGTTATGGCCAACTCTGCGGAGAAAATTAGACTTGCTGGAAATCAAAA
TGTGATGGTCTGTGAGCGAGGCACCATGTTTGGCTACAATGATCTAATTGTTGATCCAAG
GAACTTTGAGTGGCTGAGGGAAGCAAATTGCCCAGTTGTAGCTGATGTAACACATGCGCT
ACAACAACCAGCTGGGAAAAAGCTTGATGGTGGCGGGGTTGCAAGTGGGGGCTTACGAGA
ACTCATACCATGCATCGCAAGGACTGCTGTTGCAGTTGGTGTTGATGGTATTTTCATGGA
GGTACATGATGATCCCCTGAATTCACCATGTGATGGGCCAACTCAATGGCCATTGCGCAA
TTTGGAGGAGCTGTTGGAAGAATTGATTGCGATCGCTCGAGTCAGCAAAGGAAAGAAACC
GCTCAAGATCGACCTAACCCCATTCAAGGAATGATTTGGCAGTGGATAGCAGTAGGAATA
ACCTCGTCGCCGCCATTTGGTTTCACCAATATGGCCGTGTCCAGGCGAGTTGCTCTTTGT
ATGCGGTACTTTAATTTACTGTCGGCTTCAAGCTTTGTTGGATTGTCTGCATGTTTTAGT
TTCTTTCCAAACGTAGCATAGCAGCCACATGTTGCTGTTTTGAATCACTCTGTCTGGAGA
GTTAATCCGAAGGAAGTCGACTTTTGATTTGTGAAAAAAAAAAAAAAGCACATTTTTTGA
AATCAAACAGCAGGGTAAAGAAACACACACGGTTGCATGAGCCCAAAAAAAAAAAAAAAA
A

Homology of Contig U35_1937 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g10784.1	292	0.0	protein\|2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
Brachypodium v1_2	Bradi4g40150.1	292	0.0
Arabidopsis v10	AT1G16340.4	293	1e-167	\| Symbols: ATKDSA2 \| Aldolase superfamily protein \| chr1:5588123-5590469 REVERSE LENGTH=293