barSeed - Barley Seed Development Database

Probe CUST_36222_PI390587928

Source Contig U35_1938

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36222_PI390587928	Hv_44K_v2	AAATTTCTTCTTTGTGGAGTACCAAGCGCGCTGGACTCTTGTTTGCTGGGCTCATTAGAA	1558	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353915	3021	2e-24	1151 - 1210	100	60 / 60	plus	ABC09318 ABC10947
MLOC	AK371695	3078	2e-24	1208 - 1267	100	60 / 60	plus	ABC09318 ABC10947
JLOC1	JLOC1_43770.1	3886	8e-25	1919 - 1978	100	60 / 60	plus
Harvest21	ABC10948	1335	3e-25	1102 - 1161	100	60 / 60	plus
Harvest35	U35_1938	2212	3e-25	1559 - 1618	100	60 / 60	plus

Contig Sequence (2212 bp)

>U35_1938 2212 Hv_44K_v2
CAGCCACCGCCTGGACTGGACGCCTCCGTCTGCTCCTCCGTGCCCCATCCATCCGCATCC
GCATCCGCATCCGCCACCGTCCTCCACGCCCTCCGGTGCGCATGATTCAGTAGGCAACGA
GCTCCTCCTCCTCCTCCTCCTCAGCCCCACACTTCCCGGATCCTCGTCGCCCCGGCCGAG
CAGAGACCGGAGCCCCGCCGCAGATCCGCAGGGAAGAATGGACGCCCCGTCGGTGGCGCT
GTACAGCCAGCTAAAGGCTGCTCAACCATTCTTCTTGTTTGCTGGGCCCAATGTGATTGA
ATCAGAGGAACATGTCATGAAGATGGCCAAACACATCAAGGCCATCACAACCAAACTTGG
GGTACCTCTTGTGTTCAAATCAAGCTCGAGTTTTCTTTCTTTCTTTCTTGGATTCATTCG
TTGGTTGGTTCGTTCATCGGGTCGGGGATGGGCGGGGGCTGCTGCTGGGTTGGGCTCGCG
TCCAATTCCCCACCACAGCCAGCACAAGTACGCCTCTTTTTTATTGTTCCAGGAGTGGGA
TTTGCCTTTGCGCTGTGAGAGGAGCTATTTCCGCGATTCTCATTAGGGCTCTCTCCCTCC
TCCGTCTTCGTCTTCGTCTTCGTCTTCTCCCCCACGCTTTACTCTTTCGCTATCCTCCCT
TTGCGCGCCCCGAATCCAATCCTCCCCCCACCTCCGCCGCTCCCCGTCCGGATCCGGTTT
CGCCCGTCCCGCCGGCCCCCGATTCGGCCGCCAAAATCCGCGTCCAGGGGTTCCATGAAG
TGACGCCCTGCCGAGGTGAATTTCCGCGTCTTCCTCGCAGTTTTTGCCTGCGGCCATGTC
GCAAATCCAGAGCTTGTCAAGGAGCTGCGTGCTGCTCGCGGTGCTCTGCGGCAAGCACGC
CGATAAGCAGCAGCGCACCCCGCCGGGGAGGTCGGGGCCGGAGGCGAAGCGGCTGCGGCC
GTCCTATCCGTTTCCTGAGCTCAGCTCAGCGGGGAGGCTGGAGGTGCACACGCTGGTCAA
TCCAACGCCGGAGCAGTTCCTCGAGGCGCAGCGGGTCGTGCAACCCAACTTCTTCTATAT
CCAAGGCCAGCAGCTGGAAGACGAGGAGATTGGTTCGCTCGTCTGGGGGGACGCCGACAT
GTCTGACCCGCAGTCGTTTGTCTGTCTCATCAGCCCGCCGTTCCCCACCATTGTCTATCT
GGAGGTTCCTATTGGTGAAAAACTTGCCCAAGCAGTTCACTCAAAGGGTATTCCATACGT
AATATACTGGAGAAATTCATTTTCATCTTATGCGGCATCCCATTTTCGCAATGCATTGTT
TTCGGTAGTTCAAAGTTCGGTGAGCCATACTTGGGATTCCTTTCAGCTTGCTCATGCATC
GTTTCGACTATACTGTGTAAGAAACAATCATGTTCAAAGTGTTAAGCTCGGGCCTCGACT
ACTTGGGGATGCTCCAAAGGTCAATGTCGTCATTCCCGAGAATGAAATGGCTGAGGAAGA
AGGTTCTTCTTCTGAAGTGTCCCCAGCCATAAAGATATATGATGATGACATCAACATGAA
ATTTCTTCTTTGTGGAGTACCAAGCGCGCTGGACTCTTGTTTGCTGGGCTCATTAGAACA
TGGTCTGAATGCTCTATAATTATCGAAATTCCTGGGAGTAAACTTCAGAATCGAATCAGT
GCTTCCCCACCGCCTCTTGAAGCAGCATCTATACCACGTGGAATGGTTACCATGCGTTGC
GATATGACTACTTGCCGTTCTTCTCATGTGTTACTTCTTGTTTCTGGGAGTGCACAAACT
TGTTTTGATGACCAGGTTGTAACAAAATTTCTCACTATGGAGTCCTTGCTTGATGAGAGC
GTTGACAAGGAGATAAATTTGCAGATCGAAAGAGGTGGAACTCCTTTAACAGTAACGCTG
AAGGTAAAGGATTTGTACTCCATAACTCCAAATCATTTCCTGGAACTTAGTGGTGTTGTC
ATCCATCCACTTTCATACCAGCAGGATGATCTGAAGGACCCAGAAGAAGTAGAGGACAGG
AGGGAGGAGGGAACAAGAAGCTTCATTTATCATTGATGTTATGTTGTGTACTTGTTGGGC
CTTGAACCTTTATGTGTAGAGGAGTCGATGGATGATGTATTGTAATTCATGTGATGTGTT
ACTGAAATGAAATATATACAACTAATTTGCAATATAAAAAAAAAAAAAAAAA

Homology of Contig U35_1938 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g26390.1	766	4e-154	protein\|AT-rich interaction region, putative, expressed
Brachypodium v1_2	Bradi4g31016.2	770	5e-160
Arabidopsis v10	AT3G43240.1	747	4e-83	ARID/BRIGHT DNA-binding domain-containing protein \| chr3:15210032-15214440 REVERSE LENGTH=747