barSeed - Barley Seed Development Database

Probe CUST_36221_PI390587928

Source Contig U35_1939

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36221_PI390587928	Hv_44K_v2	TGGGAAAATTATCAATATCAAGAAAGGACAATTCTGTGCTCCGTCTGTTATGGCCAACTC	611	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44325.1	1460	7e-23	650 - 709	98	59 / 60	minus	ABC06976 ABC28964
MLOC	MLOC_44325.2	1456	7e-23	706 - 765	98	59 / 60	minus	ABC06976 ABC28964
JLOC1	JLOC1_28717.1	1662	4e-23	729 - 788	98	59 / 60	plus
Harvest21	ABC06977	1378	3e-25	612 - 671	100	60 / 60	plus
Harvest35	U35_1939	671	3e-25	612 - 671	100	60 / 60	plus
Harvest35	U35_1937	1441	3e-25	628 - 687	100	60 / 60	plus

Contig Sequence (671 bp)

>U35_1939 671 Hv_44K_v2
CTCTCTCCCCCGCTCCGCTTCATCCCACCGCCTGGACTGGACGCCTCCGTCTGCTCCTCC
GTGCCCCATCCATCCGCATCCGCATCCGCCACCGTCCTCCACGCATGACGACCTGATTCA
GTAGGCAACGAGCTCCTCCTCCTCCTCAGCCCCCCACTTCCCGGATCCTCGTCGCCCCGG
CCGAGCAGAGACCGGAGCCCCGCCGCAGATCCGCAGGGAAGAATGGACGCCCCGTCGGCG
GCGCTGTACAGCCAGCTAAAGGCCGCTCAACCATTCTTCTTGTTTGCTGGGCCCAATGTG
ATTGAATCAGAGGAACATGTCATGAAGATGGCCAAACACATCAAGGCCATCACAACCAAA
CTTGGGGTGCCTCTTGTGTTCAAATCAAGCTTTGATAAAGCAAACCGTACATCGTCGAAA
TCCTTCCGTGGTCCTGGTCTGGAGCAAGGCCTAAAGATCCTTGAAAAGGTGAAGGCCGCA
TATGACCTTCCAGTGGTCACCGATGTGCATGAAAGCTCCCAGTGTGAAGCTGTTGGAAGA
GTTGCTGATATTATACAGATTCCAGCTTTCCTCTGTCGCCAGACTGACCTTCTAGTGGCT
GCGGCTAAGACTGGGAAAATTATCAATATCAAGAAAGGACAATTCTGTGCTCCGTCTGTT
ATGGCCAACTC

Homology of Contig U35_1939 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g10784.3	271	1e-91	protein\|2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
Brachypodium v1_2	Bradi4g40150.1	292	5e-93
Arabidopsis v10	AT1G16340.4	293	1e-77	\| Symbols: ATKDSA2 \| Aldolase superfamily protein \| chr1:5588123-5590469 REVERSE LENGTH=293