barSeed - Barley Seed Development Database

Probe CUST_36220_PI390587928

Source Contig U35_1940

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36220_PI390587928	Hv_44K_v2	TTGTCGCCAGACTGACCTTCTAGTGGCTGCGGCTAAGACTGGGAAAATTATCAATATCAA	640	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44325.1	1460	6e-24	689 - 747	100	59 / 59	minus	ABC06976 ABC28964
MLOC	MLOC_44325.2	1456	6e-24	745 - 803	100	59 / 59	minus	ABC06976 ABC28964
JLOC1	JLOC1_28717.1	1662	3e-24	691 - 749	100	59 / 59	plus
Harvest21	ABC06978	725	3e-25	641 - 700	100	60 / 60	plus
Harvest21	ABC06977	1378	1e-24	574 - 632	100	59 / 59	plus
Harvest21	ABC06975	662	1e-24	590 - 648	100	59 / 59	plus
Harvest35	U35_1940	725	3e-25	641 - 700	100	60 / 60	plus
Harvest35	U35_1939	671	1e-24	574 - 632	100	59 / 59	plus
Harvest35	U35_1937	1441	1e-24	590 - 648	100	59 / 59	plus

Contig Sequence (725 bp)

>U35_1940 725 Hv_44K_v2
TGCAGGCAATTCGGTACGAGGATCTACCGGCAGTCGTCATCCTCCAGCAAAGTGCAAACC
CCCATCTGCTCTCTCTCCCCCGCTCCGCTTCATCCCACCGCCTGGACTGGGCGCCTCCGT
CTGCTCCTCCGTGCCCCATCCATCCGCATCCGCCACCGTCCTCCACGCCCTCCGGTGCGC
ATGATTCAGTAGGCAACGAGCTCCTCCTCCTCCTCAGCCCCACACTTCCCGGATCCTCGT
CGCCCCGGCCGAGCAGAGACCGGAGCCCCGCCGCAGATCCGCAGGGAAGAATGGACGCCC
CGTCGGTGGCGCTGTACAGCCAGCTAAAGGCTGCTCAACCATTCTTCTTGTTTGCTGGGC
CCAATGTGATTGAATCAGAGGAACATGTCATGAAGATGGCCAAACACATCAAGGCCATCA
CAACCAAACTTGGGGTGCCTCTTGTGTTCAAATCAAGCTTTGATAAAGCAAACCGTACAT
CGTCGAAATCCTTCCGTGGTCCTGGTCTGGAGCAAGGCCTAAAGATCCTTGAAAAGGTGA
AGGCCGCATATGACCTTCCAGTGGTCACCGATGTGCATGAAAGCTCCCAGTGTGAAGCTG
TTGGAAGAGTTGCTGATATTATACAGATTCCAGCTTTCCTTTGTCGCCAGACTGACCTTC
TAGTGGCTGCGGCTAAGACTGGGAAAATTATCAATATCAAGAAAGGACAATTCTGTGCTC
CGTCT

Homology of Contig U35_1940 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g10784.3	271	5e-89	protein\|2-dehydro-3-deoxyphosphooctonate aldolase, putative, expressed
Brachypodium v1_2	Bradi4g40150.1	292	2e-90
Arabidopsis v10	AT1G16340.4	293	5e-75	\| Symbols: ATKDSA2 \| Aldolase superfamily protein \| chr1:5588123-5590469 REVERSE LENGTH=293