barSeed - Barley Seed Development Database

Probe CUST_36219_PI390587928

Source Contig U35_1942

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36219_PI390587928	Hv_44K_v2	TTTTGTAGCGCTCCTGGTGATCCGTCGCCATTTCAATCCCAAAATGTGTGTTGTATCAAA	2136	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.471	1.471	0.961	0.895	0.382	0.399
Raw	6119.083	9338.490	5492.633	8279.643	1187.640	1359.127

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65829.2	3610	3e-21	4 - 57	100	54 / 54	minus	ABC07268 ABC36839
MLOC	MLOC_65829.1	3081	3e-21	4 - 57	100	54 / 54	minus	ABC07268 ABC36839
JLOC1	JLOC1_43345.3	3530	1e-22	3465 - 3524	98	59 / 60	plus
JLOC1	JLOC1_43345.2	2849	1e-22	2784 - 2843	98	59 / 60	plus
JLOC1	JLOC1_43345.1	2876	1e-22	2811 - 2870	98	59 / 60	plus
Harvest21	ABC36839	526	3e-25	15 - 74	100	60 / 60	minus	ABC36839
Harvest35	U35_1942	2210	3e-25	2137 - 2196	100	60 / 60	plus
Harvest35	U35_1943	794	1e-23	719 - 779	98	60 / 61	plus

Contig Sequence (2210 bp)

>U35_1942 2210 Hv_44K_v2
TTCCAGAACAAGAGGACCCAAATGAAGAACCAGCACGAGAGGCACGAGAACTCGCAGCTG
AGGGCGGACAACGACAAGCTGCGGGCGGAGAACATGCGCTACAAGGAGGCGCTCAGCAGC
GCGTCATGCCCCAACTGCGGCGGCCCGGCGGCGCTCGGCGAGATGTCGTTCGACGAGCAC
CACCTCCGCGTCGAGAACGCGCGCCTGCGCGACGAGATCGACCGCATCTCCGCCATCGCC
GCCAAGTACGTCGGCAAGCCCATGGTGCCCTTCCCGGTGCTCTCCAGCCCCCTCGCCGCC
GCCCCGGGCGCCTCCGCCTACGACGTCTTCGCCGGGGCTGCCTCCGTGCTGCAGGCGCCG
CCTGACGACAAGCAGCAGGGCGTCGTGGTCGAGCTGGCCGTCGCCGCCATGGAGGAGCTG
CTCCGCATGGCGCGCCTCGACGACCCGCTCTGGGCCACCACGGTGGACCAGACGCTGGCG
CTGGACGAGGAGGAGTATGCAAGGATGTTCATCGACCCACGCGGCGGCCTTGGACCTAAG
CAGTATGGCCTCGTCTCTGAGGCCTCCCGCGACGCCACCGTTGTCATCATGACCCCCGCC
AGCCTCGTCGAGATCCTCATGGACGTCAACCAGTACGCGGCAGTGTTCTCGAGCATCGTG
TCAAGGGCGGCAACGCTGGAGGTGCTGTCCACCGGCGTGGCTGGGTGCTACGACGGCGCG
CTGCAGGTCATGTCGGTGGAGTTCCAGGTGCCGTCGCCGCTGGTGCCGACAAGGGAGAGC
TACTTCGTGCGCTACTGCAAGCGCAACGCTGATGGAGCCTGGGCCGTCGTCGATGTGTCG
CTGGACGGCCTGCAAGGGGTCAAGTGCCGGCGCAGGCCCTCCGGTTGCCTCATCCAGGAG
GCGCCCAACGGCTACTCCAAGGTGACGTGGGTGGAGCATGTGGAGGTGGACGACAGGTCC
GTGCACAACATCTACAAGCCGCTGGTCGGCTCCGGCCTGGCCTTCGGCGCCCGCCGGTGG
GTTGGCGTCCTCGGCCGCCAGTGCGAGCGCCTTGCCAGCGCCATGGCCAGCAACATCCCC
ACCAGCGACATCGGAGTGATCACGAGCTCAGAGGGGAGGAAGAGCATGCTGAAGCTGGCG
GAGAGGATGGTGGCAAGCTTCTGCGGCGGCGTGACGGCCTCTGTGGCGCACCAATGGACA
ACACTGTCGGGGAGCGGCGCCGAAGACGTCAGGGTCATGACCAGGAAGAGCGTCGACGAC
CCAGGGAGGCCGCCGGGCATCGTCCTCAACGCCGCTACCTCCTTCTGGCTCCCTGTCCCG
CCCAAGCGCGTCTTTGACTTCCTCCGTGACGAAACCTCTCGCAGCGAGTGGGACATCCTT
TCCAATGGCGGCATCGTTCAAGAAATGGCTCACATCGCCAATGGCCGTGACCATGGCAAC
TGCGTCTCACTCCTTCGCGTGAATAGCACCAACTCGAACCAAAGCAACATGCTGATCCTG
CAAGAGAGCTGCACGGACGCATCAGGCTCCTACGTCATCTACGCGCCGGTGGATGTGGTG
GCAATGAACGTGGTTCTCAACGGCGGCGACCCTGATTACGTCGCGCTCCTGCCCTCGGGC
TTCGCCATCCTGCCCGACGGTCCTGCAGGGACAATGCACGCCGCGGCAGGGGCAACCGGC
ACCGGTGGGTCGCTCCTGACGGTGGCGTTCCAGATCCTGGTCGACTCCGTCCCCACTGCC
AAGCTCTCCCTAGGGTCGGTGGCCACCGTCAACAGCCTCATCGCCTGCACCGTGGAGCGC
ATCAAGACCGCCGTCATCTCCAATGGCGGCGCCTCTCCCCCGCAGTAGCTTCGTTCAATT
CATCAATCTTCCTATGTTCTGTATCAGAGGAGCAGCAAAATTTTGGAGCCTTCATCTTCG
TGTCGGCCTCTCGGATGCTGCTACCTCTGAGTTTCTTTTCTAGGGTTCTTCGTCGAGTAC
AAAAAAACCGTAATTTTCTTCAGTCAGTCTGTCTGTAATTCCTTCGACTTGTCGTTGTTC
ATGCTGCTGTTTCAGACTTCCAGTGCTTTGTAGGTGCAGCAGAATAGAGATTTGTGCCCA
TCTGTCTGTCTGTTGCTTTGGATTGTGGGTTTATAATTTTGTAGCGCTCCTGGTGATCCG
TCGCCATTTCAATCCCAAAATGTGTGTTGTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1942 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g53540.3	785	protein\|homeobox and START domains containing protein, putative, expressed
Brachypodium v1_2	Bradi5g22570.2	788
Arabidopsis v10	AT1G05230.1	721	\| Symbols: HDG2 \| homeodomain GLABROUS 2 \| chr1:1513388-1517024 REVERSE LENGTH=721