barSeed - Barley Seed Development Database

Probe CUST_36218_PI390587928

Source Contig U35_1943

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36218_PI390587928	Hv_44K_v2	GACTTCTTCGTTCCATGCAAGAAAACATTTGCCAAAACAAGATGCGGTCACCACTACGCA	408	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65829.2	3610	2e-24	308 - 367	100	60 / 60	minus	ABC07268 ABC36839
MLOC	MLOC_65829.1	3081	2e-24	308 - 367	100	60 / 60	minus	ABC07268 ABC36839
JLOC1	JLOC1_43345.3	3530	8e-25	3155 - 3214	100	60 / 60	plus
JLOC1	JLOC1_43345.2	2849	8e-25	2474 - 2533	100	60 / 60	plus
JLOC1	JLOC1_43345.1	2876	8e-25	2501 - 2560	100	60 / 60	plus
Harvest21	ABC07268	1209	3e-25	861 - 920	100	60 / 60	plus	ABC07268
Harvest21	ABC50507	528	1e-23	257 - 316	98	59 / 60	minus
Harvest35	U35_1943	794	3e-25	409 - 468	100	60 / 60	plus

Contig Sequence (794 bp)

>U35_1943 794 Hv_44K_v2
GCGCTCCTGCCCTCGGGCTTCGCCATCCTGCCCGACGGTCCTGCAGGGACAATGCACGCC
GCGGCAGGGGCAACCGGCACCGGTGGGTCGCTCCTGACGGTGGCGTTCCAGATCCTGGTC
GACTCCGTCCCCACTGCCAAGCTCTCCCTAGGGTCGGTGGCCACCGTCAACAGCCTCATC
GCCTGCACCGTGGAGCGCATCAAGACCGCCGTCATCTCCAATGGCGGCGCCTCTCCCCCG
CAGTAGCTTCGTTCAATTCATCAATCTTCCTATGTTCTGTATCAGAGGAGCAGCAAAATT
TTGGAGCCTTCATCAGTGGGAAGTCAAGAACGCACCTCAGACTCTCCTTGCCATGTGGTG
CTCATAGCCATAGATTGTTCCCTGTGAATTCGACCGGGGAAACTCCGCGACTTCTTCGTT
CCATGCAAGAAAACATTTGCCAAAACAAGATGCGGTCACCACTACGCAAGGGCGGTTGGT
TCGGGTATTGACTTCATCTTCGTGTCGGCCTCTCGGATGCTGCTACCTCTGAGTTTCTTT
TCTAGGGTTCTTCGTCGAGTACAAAAAAACCGTAATTTTCTTCAGTCAGTCTGTCTGTAA
TTCCTTCGACTTGTCGTTGTTCATGCTGCTGTTTCAGACTTCCAGTGCTTTGTAGGTGCA
GCAGAATAGAGATTTGTGCCCATCTGTCTGTCTGTTGCTTTGGATTGTGGGTTTATAATT
TTGTAGCGCTCCTGGTGATCCGTCGCCATTTCAATCCCAAAATGTGTGTTGTGATCAAAA
AAAAAAAAAAAAAA

Homology of Contig U35_1943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None