barSeed - Barley Seed Development Database

Probe CUST_36214_PI390587928

Source Contig U35_1947

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36214_PI390587928	Hv_44K_v2	ACTGCCCCCTCATCTCACTGTAATCTTTGTCTCTGGTGCTTGTGTACAATACCATTCTTT	2283	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375108	3843	2e-24	3753 - 3812	100	60 / 60	plus	ABC05295 ABC15479 ABC16730
MLOC	MLOC_36395.1	3601	2e-24	3397 - 3456	100	60 / 60	plus	ABC05295 ABC15479 ABC16730
JLOC1	JLOC1_23426.1	3643	8e-25	3405 - 3464	100	60 / 60	plus
Harvest21	ABC05295	2392	3e-25	2284 - 2343	100	60 / 60	plus	ABC05295
Harvest35	U35_1947	2431	3e-25	2284 - 2343	100	60 / 60	plus

Contig Sequence (2431 bp)

>U35_1947 2431 Hv_44K_v2
GCTAGATGACCTTCTTGCTGCAGAAGATCTTGCTGCTGCTGAAACAACAAGTGCAGCTAA
CCATGCAGCTGCAGCTGCCGCTAACATGCAAGCTGGAGGAACACCTGGCAGATTTGCTTA
CAATGATGAGCAAACAGGGCAAACGACTACAGAAACAACTGCTGATGGAGCTGTGGTTCT
TGGAACCCCAGTTGCACCTCCTGTTAATGGGGATGTGTATACTGATATCAGCCCTGAGAA
TGCAGTGATCCAGGGACAGAGGAGATCGAGCAAAGGTGTTGATTATTTGGTCGAAGCATC
TGCTGCAGAGGCTGAGGCAATCAGTGCTACTTTGGCTGCTGTAAAGGCCAGGCAAGTTAA
TGGTGAGATGGAGCATTCACCTGACTCTCCAGACGCCACACAAAGTGGGAAGCTAAATTC
AAGCCTTATCAAACCAGATGTTGCTCTTGCAAACAATTCAACACCACCTCCCGGGGTTCG
GTTACACCATAGAGCAGTTGTGGTAGCAGCAGAAACAGGAGGTGCCTTAGGTGGCATGGT
TAGGCAGCTGTCAATTGATCAGTTTGAAAATGAAGGAAGAAGGGTTATCTATGGCACTCC
TGAGAATGCAACTGCAGCTAGAAAATTACTGGATAGACAAATGTCTATTAATAGTGTGCC
CAAAAAGGTAATTGCCTCTCTCTTGAAACCCCGTGGTTGGAAGCCCCCTGTACGAAGGCA
ATTCTTCCTGGACTGTAATGAGATAGCAGATCTGTGTGATAGTGCCGAAAGGATATTTTC
AAGTGAACCAAGTGTCATAAAGCTTAAAGCTCCCATTAAGATATTTGGTGATTTGCATGG
TCAATTTGGTGACTTAATGCGCTTATTCGACGAGTATGGTGCTCCCTCAACAGCAGGAGA
TATTGCTTACATTGATTATCTCTTCTTGGGAGACTATGTTGATCGTGGTCAACATAGTTT
AGAGACTATTACTCTTCTCCTTGCACTGAAGGTTGAATATCCTCAAAACGTGCATTTGAT
TCGAGGAAATCATGAGGCGGCAGATATCAATGCGCTGTTTGGATTCCGGATAGAGTGCAT
AGAGCGAATGGGTGAGCGAGATGGAATTTGGACCTGGCATCGCGTGAATAGGTTATTTAA
TTGGCTTCCTTTGGCTGCCCTAATAGAGAAGAAAATAATATGCATGCATGGTGGGATTGG
ACGTTCCATCAACCACATAGAGCAAATTGAAAATCTTCAAAGACCGATTACCATGGAAGC
AGGCTCAGTTGTTCTAATGGATCTTCTATGGTCAGATCCAACTGAGAATGACAGTGTTGA
AGGACTCAGACCAAATGCTCGGGGCCCAGGTCTTGTCACCTTCGGGCCTGACCGTGTTAT
GGAGTTCTGCAACAACAATGACCTGCAGTTAATTGTGCGAGCACATGAGTGTGTGATGGA
TGGCTTTGAGCGTTTTGCCCAAGGTCACTTGATCACCCTCTTCTCGGCAACAAACTACTG
TGGTACGGCAAACAACGCAGGTGCAATCTTAGTTCTGGGAAGGGATCTTGTGGTTGTCCC
AAAACTCATTCATCCTTTGCCACCTGCCATTACATCTCCTGAGACATCCCCGGAGCACCA
TATTGAGGACACATGGATGCAGGAACTAAACGCCAACAGGCCACCAACTCCAACCAGGGG
CCGCCCTCAAGCAGCTAACAATGACCGAGCAGGCCCTCTTGCATGGATATAGCAGCTTCG
CGGCATGCTGAAGCAACCTGTTCTATGTCTCCGTCAGTGGGTTCTGGCTATATTTATCAT
TCTGTCCCACAGGCGGATGATCTTATGCCCAGGTGACATGCTATCCCACAACAACAATGG
CAACAGGATATCTTTTGCGGGGATCATCTAAGCTTAGCGATCTGAGGGCAAAAGCGGAGA
AGTTTTGTGGATCACCGCGGACAGAGCTCTCCAAGCTTTTTCCCTAAACATGACAAGTAG
AGGAGCCGACCATCGGCTTACCGATAGATCCTGCCTGCTAGGCTTCACCTGTACATATGC
TCAGATGCCAGCCGGCAGATAGGTGGGGTGTATGTTGTTTTGTCGACAGATTGGAGGGGG
TGGCAGAAGGGGATGATAGTGTTATTGTACTAGGTATTCTTTTCCTGTGTCTAGTTTCTT
TTTCCCAACATGTTGCAAAGTAATGGAGTGGCCAAAAGGAGGAGTAAACTTATTTGATGG
GGGCCTGTCTGTCTGTCTGCCAGCCCTTGTAAAATAGCGGTATTCACCTGTTTGTGTTGT
CACACTGCCCCCTCATCTCACTGTAATCTTTGTCTCTGGTGCTTGTGTACAATACCATTC
TTTTTTTCTGTTTAAAAAAAAAAAAAAAAAGTGGTGAACACAATTGGTGTTTTAATTTAA
TTTATTGTAGGTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1947 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g42310.1	1010	protein\|serine/threonine-protein phosphatase BSL2, putative, expressed
Brachypodium v1_2	Bradi4g01410.1	989
Arabidopsis v10	AT2G27210.1	1006	\| Symbols: BSL3 \| BRI1 suppressor 1 (BSU1)-like 3 \| chr2:11630188-11636182 FORWARD LENGTH=1006