barSeed - Barley Seed Development Database

Probe CUST_36208_PI390587928

Source Contig U35_1953

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36208_PI390587928	Hv_44K_v2	TCTTTTTCCGATTGGTTGATGTGATGTGCTGGCTCTAAATGTGCTCGTGAGGCCTTGATT	2038	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.142	2.018	1.182	0.656	0.196	0.189
Raw	2740.520	3983.213	2074.133	1823.984	192.350	200.640

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_36287.1	2269	8e-25	2145 - 2204	100	60 / 60	plus
Harvest35	U35_1953	2112	3e-25	2039 - 2098	100	60 / 60	plus

Contig Sequence (2112 bp)

>U35_1953 2112 Hv_44K_v2
CCTTTTCCCTCCTCCCCCTCCCCTCTCGGCCTCTTCCTTCTCGCGCCGCCCAGATCTCTC
GCCTCACTCCAAACCCTAGCTCCGCCTCCGCGCAGCCACCAGCCATGTCGTCGATGATGC
AACCGCAGATCATCCTGCTCAAGGAGGGGACGGACACGTCGCAGGGCCGCGCGCAGGTGG
TCAGCAACATCAGCGCGTGCACGGCCGTGGCCGACACGGTGCGGACCACCCTGGGCCCCC
GCGGGATGGACAAGCTCATCCACGACGACAAGGGCACCACCATCTCCAACGACGGCGCCA
CCATCATGCGCCTCCTCGACATCGTGCACCCCGCCGCCAAGATCCTCGTCGACATCGCAA
AGTCTCAGGACTCGGAGGTTGGTGATGGCACAACTACGGTGGTTCTTCTTGCTGCGGAAT
TCATGAAGGAAGCTAAACCTTATGTGGAGGATGGAGTGCATCCTCATAGTCTAATCCGTA
GTTACAGGAGTGCCGGCAACATGGCAATTGAAAGGGTTAGAGAACTGGCAGTCAGCATAG
AAGGAGAAAGCCTGGAAGAGAAGAAATCATTGTTAGCCAAGTGTGCTGCCACGACACTCT
CGTCAAAATTGATAAGTGGAGAGAAAGAGTTCTTTGCTTCGATGGTTGTGGATGCTGTCC
TTGCTATCGGTCATGATGACAGACTTAACCTTATAGGAATTAAGAAGGTTCCTGGAGGTA
CCATGAGAGATTCCTTCCTTGTCAACGGTGTTGCTTTCAAGAAGACATTTTCCTATGCTG
GATTTGAGCAACAACCAAAGAAATTCCTGAATCCAAAGATTCTTTTGTTGAACATTGAGC
TAGAGTTGAAGTCTGAGAAAGAAAATGCAGAGATCAGATTATCAGACCCCATGCAGTACC
AATCAATTGTTGATGCTGAATGGAACATTATTTATGACAAGCTGGACAAGTGCGTTCAAA
GTGGCGCAAAAATAGTTCTGTCACGGCTAGCTATCGGTGACCTTGCAACACAGTATTTTG
CGGATAGAGACATTTTCTGTGCTGGTCGCGTCACAGAAGAGGATTTACAACGCCTAAGCT
CAGCTACAGGCGGAACTGTTCAAACCTCCGTCAACAATGTCATTGATGAGGTCCTTGGCA
CATGTGAGGTTTTCGAGGAAAAGCAAGTAGGCAATGAAAGGTTCAACATATTTAGTGGCT
GCCCTTCTGGTCAGACAGCAACTATTGTTCTTCGTGGTGGTGCTGACCAGTTCATAGAGG
AAGCTGAAAGAAGCCTCCATGATGCCATCATGATTGTGAGGAGAGCTGTTAGGAATTCAA
CAGTTGTGCCTGGTGGTGGTGCCATTGATATGGAGATAAGCAAGTATCTCCGCCTGCATG
CACGGAACATAGCTGGAAAGTCTCAGTTTTTTGTAAATTCATTTGCTAAAGCCCTTGAGG
TTATTCCTAGGCAACTTTGTGATAATGCTGGATTTGACGCAACCGATGTGCTCAATAAGC
TCAGACAGAAGCATGCAACTGATGGTGGTGCTAATTATGGTGTTGACATCAACACTGGTG
GAATTGCGGATTCCTTCGCTAACTTTGTGTGGGAACCTGCAGTCGTGAAGATCAATGCAA
TTAATGCTGCAACTGAAGCTGCCTGTCTTATTCTGAGTGTTGATGAAACAGTGAAAAACC
CAAAGTCGGAGAGCGCACAAGGTGACGCTGCTGCGATGGGCGGCCGTGGTGGAGGGGGAA
TGCGTGGCCGAGGCGGCCGGGGAATGCGCAGGCGGTAAATTCTAGTCAACTCCGCCCTGT
AACCTTATGCTGCCCTGGCGGGGTCAGATTTTGAGTTCCCTCTGTTCAGGCTGTTGGTCC
TGGCATTTGCCCGCATCCAGGTTTTGCGGAATTTGTATGTCTGATGTGAGTTTCTAGTGT
TAAGAATGTGCTAGCCTTTTCTTTGAGAACATGGAGGACATGGCAGGCGTGTGTTTATCT
AGCGGTTACTGGTTGTGTGGTATTATAGCACGAATTATGTTCTTGTTTTTGTGATTCGTC
TTTTTCCGATTGGTTGATGTGATGTGCTGGCTCTAAATGTGCTCGTGAGGCCTTGATTGC
CTGGCTGGTTGA

Homology of Contig U35_1953 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g47320.1	561	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi3g04430.1	558
Arabidopsis v10	AT3G11830.1	557	TCP-1/cpn60 chaperonin family protein \| chr3:3732734-3736156 FORWARD LENGTH=557