- Probe CUST_36202_PI390587928
- Source Contig U35_50678
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36202_PI390587928 | Hv_44K_v2 | TATCCATGGTTTGGGATTTCCCAGGGCAAGGGGTGTTTGCCCTTTGCGTTCAATAAAAAT | 34 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.014 | 0.779 | 1.113 | 1.802 | 2.889 |
| Raw | 109.263 | 790.526 | 41220.000 | 86972.933 | 48504.300 | 90074.533 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC52976 | 452 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus | ABC52976 |
| Harvest35 | U35_50678 | 452 | 3e-25 | 35 - 94 | 100 | 60 / 60 | minus |
Contig Sequence (452 bp)
>U35_50678 452 Hv_44K_v2 TTTTTTTTTTTTTTTTTAACCCCCGAGGGGACCCATTTTTATTGAACGCAAAGGGCAAAC ACCCCTTGCCCTGGGAAATCCCAAACCATGGATACCCTTCTTTAGGCAAAAAGGGATGGG AGGCCACCATCCCCGTTGCAAAAATTGACACAAGCTTCCCCACAATTTTCCAAAAAAAGT TTCTTTTTTTCGTCGTCAAAAGTTGGGTTGACCATGTAGCCCCACATGGAACCCCTACCC CCCAAGTTGCAAAACTTGACGGGGTCGGGTTCATCTGAGTTGGACACAAGGGCCAATTTG GGGAACCCTGGAGGGCATTTTCCCCTACTTGGGAGTTTACCCCTAAAAACGCCTGCGCAT AATTTTTGAACACCACGGACGCGGAAAAGGTTGTAACATTTTCTTCCTAGGGGGCTCCTG AAAAAACTCTTGCCTTCTATTTGCACCTGTTC
Homology of Contig U35_50678 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |