barSeed - Barley Seed Development Database

Probe CUST_36194_PI390587928

Source Contig U35_48366

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36194_PI390587928	Hv_44K_v2	CCATTGCCCAAAAAAGTATCCACTTGCACTGTTTTCTCTTAGTGTAAAAGAATAAATCTG	25	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55294.3	1755	2e-24	1613 - 1672	100	60 / 60	plus	ABC11736
MLOC	MLOC_55294.1	2197	7e-23	1978 - 2037	98	59 / 60	plus	ABC11736
MLOC	MLOC_55294.2	1917	7e-23	1752 - 1811	98	59 / 60	plus	ABC11736
JLOC1	JLOC1_35651.3	2043	4e-23	1754 - 1813	98	59 / 60	plus
JLOC1	JLOC1_35651.2	922	4e-23	633 - 692	98	59 / 60	plus
Harvest21	ABC50063	581	3e-25	26 - 85	100	60 / 60	minus
Harvest35	U35_48366	581	3e-25	26 - 85	100	60 / 60	minus

Contig Sequence (581 bp)

>U35_48366 581 Hv_44K_v2
CTTGTTGGTCTAAGAAGTAACATTTCAGATTTATTCTTTTACACTAAGAGAAAACAGTGC
AAGTGGATACTTTTTTGGGCAATGGTGCGTCACATTATGACTACTCAAGAAAGTTATGCG
ACCAAGCTAAGGCTTGAACATGGGTGGCCCTCTCACTTTGGTAGCCTGCTCGAAAGCATA
TGCCATCTCGATCAGCCTCGGTTCGTATCCCTGCAGCCCACCAAAGCATATCCCAAAAGG
CACACCCTTCTCGTTGTACCCAGCTGGTACAACGATGCCGGGGTGGCCGCCAATGGCGAG
ATGGTGGGAAGCATAGTGCTCGGGCGCGACGATCGCGTCGAGTTGGTGTTCCTTCATCAG
CTTCTCCAGCCCCTTCGCTGAGAGCTCCTTCAGCCAGCGGATCCGAGCTCTCTCAACACG
ACCAATACCTTTTGTATCTTGGGCTAAGATAAGGTTTGTTTGCCCGAAATCTTTTAGCCT
CTCCTCTATAGGATGTGCTTTGTTGAAAGCTATGATGTCTGCAAGAGAATGGACGGGGGA
GAAGGACAAGTCCGCCAAGTACTCGTTTATGCTCAACTTGA

Homology of Contig U35_48366 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g10460.1	504	1e-67	protein\|amidase, putative, expressed
Brachypodium v1_2	Bradi5g00860.1	520	1e-62
Arabidopsis v10	None