barSeed - Barley Seed Development Database

Probe CUST_36193_PI390587928

Source Contig U35_50682

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36193_PI390587928	Hv_44K_v2	CATCTATTTGTTTTGAATGCGATGCAAAAGACCAGAGGACATCCTAAGGAATTAAGATTA	456	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356006	1032	2e-24	957 - 1016	100	60 / 60	plus	ABC08892
Harvest21	ABC52984	521	3e-25	457 - 516	100	60 / 60	plus
Harvest35	U35_50682	521	3e-25	457 - 516	100	60 / 60	plus

Contig Sequence (521 bp)

>U35_50682 521 Hv_44K_v2
CAAGAACAGCAAATGAAGATGATGTTCGACCTTTATTTGAGGATCATGGAGATGTTCTTG
AAGTTGCTTTGATCAGGGATAGGAAAACTGGTGAACAACAAGGTGAGCAATAAGTATATT
TTTCTTATATTATCAATATACCAGTATCGCTTCCTTTTCAGGTTCTGAGAGTATTAGGAG
CAACAAGGTTGCATCTTCTCTCAGTTAGATTTGGCGGTTGTTGAATTTTGTTTCCTGCGC
TTCCGTTCTGTTTCTTCGTCTGGGTTAATAGAAGGCAAGAAAGGAAGCAGCTAACTGTTG
GCTGGTTACTGTAACCCAGCTAGGCTCCACCCTGCTGCTACATAAGGTAGCAGATTTGGA
CAAACAACTTTGTTCAAGTCATAGCAATCTTGTGTGTGTTGACGTGTTCAATGTAGTATG
ACCAGAAAATAACTAAGGGTGCTGGTGTTACTGTTGCATCTATTTGTTTTGAATGCGATG
CAAAAGACCAGAGGACATCCTAAGGAATTAAGATTAACTTC

Homology of Contig U35_50682 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None