barSeed - Barley Seed Development Database

Probe CUST_3618_PI390587928

Source Contig U35_42401

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3618_PI390587928	Hv_44K_v2	GAAAGATGAAAAGACCAGATTTAACTTGGCCCTTGAAAGCGGGAACATCCAAATCGCCGT	143	GeneList: ivory MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.011	1.052	1.429	1.112	0.895	0.679
Raw	111.548	163.053	214.996	248.697	75.879	61.390

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29110.3	2298	2e-24	969 - 1028	100	60 / 60	plus	ABC09290
MLOC	MLOC_29110.2	4344	2e-24	2020 - 2079	100	60 / 60	plus	ABC09290
MLOC	MLOC_29110.1	6672	2e-24	2212 - 2271	100	60 / 60	plus	ABC09290 ABC10354 ABC13170 ABC13171
JLOC1	JLOC1_19422.1	4470	8e-25	2095 - 2154	100	60 / 60	plus
Harvest21	ABC09290	2231	3e-25	144 - 203	100	60 / 60	plus	ABC09290
Harvest35	U35_42401	663	3e-25	144 - 203	100	60 / 60	plus

Contig Sequence (663 bp)

>U35_42401 663 Hv_44K_v2
GCTGAATACATTTTCAAGCTGGCCCTTCTACGGAAGCGCTATGATCATGTTATGAGTATG
ATTAAGAACTCACAGCTGTGTGGGCAGGCGGTCATTTCTTATCTGCAACAGAAAGGATTT
CCAGAAGTTGCTCTCCACTTTGTGAAAGATGAAAAGACCAGATTTAACTTGGCCCTTGAA
AGCGGGAACATCCAAATCGCCGTTGCTTCCGCAAAGGAGCTTGACGACAAGGATCACTGG
TACAGGTTGGGAATCGAGGCTCTGAGGCAGGGAAATGTTGGTATTGTTGAATATGCATAC
CAGCGGACAAAGAATTTTGACAGGCTTGCTTTTCTTTATCTCCTAACTGGTTACTTGGAC
AAGGTGGGCTTTATGTCTAAGATAGCTGGGCAGAATAACAATTTGATGGGCCAGTTCCAC
AATGCATTGTATCTTGGAGATGCTAAGAAAAGAGTTGAGATCTTGGAGAATGCAGGACAG
CTACCTCTAGCATATGTGACTGCTGCCACTCATGGGCTCACTGAAATTGCTGATAGGCTT
GCTGGTGAGTTAGGTGAAGATGTGCCTTCTCTACCTGAAGGGAAAACTAGATCACTTTTA
ATCCCTCCAGCACCTCTCACATCCTGTGGTGATTGGCCATTGTTGAGGGTGATGCGTGGT
ATT

Homology of Contig U35_42401 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g04110.2	1219	5e-139	protein\|coatomer alpha subunit, putative, expressed
Brachypodium v1_2	Bradi1g78470.1	1219	6e-141
Arabidopsis v10	AT1G62020.1	1216	2e-113	Coatomer, alpha subunit \| chr1:22919814-22923728 FORWARD LENGTH=1216