barSeed - Barley Seed Development Database

Probe CUST_36187_PI390587928

Source Contig U35_50686

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36187_PI390587928	Hv_44K_v2	TTTTTATTTGGCGATCTATTCTTGTGGCTTGATGGACCTCTTGCACCAACTCGATGCAGC	270	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.213	2.936	1.354	0.604	0.279	0.341
Raw	136.552	290.029	114.291	83.575	13.078	17.143

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54161.1	2683	2e-24	86 - 145	100	60 / 60	minus	None
MLOC	MLOC_54161.2	2652	2e-24	10 - 69	100	60 / 60	minus	None
MLOC	MLOC_54161.3	2644	2e-24	10 - 69	100	60 / 60	minus	None
JLOC1	JLOC1_34851.5	2781	8e-25	2691 - 2750	100	60 / 60	plus
JLOC1	JLOC1_34851.4	2807	8e-25	2717 - 2776	100	60 / 60	plus
JLOC1	JLOC1_34851.3	2810	8e-25	2720 - 2779	100	60 / 60	plus
JLOC1	JLOC1_34851.2	2732	8e-25	2642 - 2701	100	60 / 60	plus
JLOC1	JLOC1_34851.1	2735	8e-25	2645 - 2704	100	60 / 60	plus
Harvest21	ABC52989	357	3e-25	271 - 330	100	60 / 60	plus
Harvest35	U35_50686	357	3e-25	271 - 330	100	60 / 60	plus

Contig Sequence (357 bp)

>U35_50686 357 Hv_44K_v2
TATCATCATAACTGGAGGGATTAAGGAGCTCCTTCGCATATCAAGAGAGTCTCCAAGAGA
GGACGCCCGTAACCTGGCGAAAAAAGCACTAAATTCAAACCCAGCTTTCTTAAAGGAGAT
ACAATGAATTCTCATTTTTCGTATTTACATTTGGCATATGATGTACCCATTCATATTTAG
CTTGAGTAGCTGGATACTATTACTAGGGTCTAGGTATTGAAATCTGTAGAAAACCTCTGA
TCAAGCTATTATTGTAAGTGGTAAATACCTTTTTTATTTGGCGATCTATTCTTGTGGCTT
GATGGACCTCTTGCACCAACTCGATGCAGCCAGAATAGGCACAAGCATTGTTTCAGG

Homology of Contig U35_50686 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None