- Probe CUST_36185_PI390587928
- Source Contig U35_50687
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_36185_PI390587928 | Hv_44K_v2 | ACGGAATAGTTGTTTTCGGGATTTTGGCATGTTTAATCACTCTAGCTGTGACGGATTATG | 364 | GeneList: darkslateblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.442 | 2.574 | 1.729 | 0.925 | 0.263 | 0.485 |
Raw | 65.727 | 191.713 | 103.945 | 85.885 | 8.715 | 18.476 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK366718 | 1848 | 2e-24 | 412 - 471 | 100 | 60 / 60 | plus | ABC13841 ABC29770 |
Harvest21 | ABC52990 | 424 | 3e-25 | 365 - 424 | 100 | 60 / 60 | plus | |
Harvest35 | U35_50687 | 424 | 3e-25 | 365 - 424 | 100 | 60 / 60 | plus |
Contig Sequence (424 bp)
>U35_50687 424 Hv_44K_v2 CGTGGCGGAGGTTGATGCCGGGGTGGACGCGCTCTAGTCTATTGAGAGGGAGCTCGGCGT GGGCGCCGGCGTCGGCCGCAGCCCCGTCAAGCGCAGGCCCAAGCTATGAGATTCTCTGCG AGTTCTTCAACTGCTTTGAGAGCTCCACCCGGCTCCTCCGCATGAAGGGATCCAAGGCAA CATTCCCCAACATCTGCGCTAGCATTCGGAACTTGGCTGAGAGGAGGTTTACCTATGGCC ATCTCGCACAGCTCAAGTACATCATGCCCGAGGCTATGGTACAGCGTGTTCATGCTAGTA TTGTTGTGAACAGTCTTGGCACATATTATATTGGTAGGCTCAAATTGTATCTCTCCGATA GCACACGGAATAGTTGTTTTCGGGATTTTGGCATGTTTAATCACTCTAGCTGTGACGGAT TATG
Homology of Contig U35_50687 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |