- Probe CUST_36181_PI390587928
- Source Contig U35_48371
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36181_PI390587928 | Hv_44K_v2 | CTCCATGAAAACTGTTACTGCCTTACACTTGTGTTTTTGGCAGTTGCATCGATGTTTTTT | 63 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.821 | 3.689 | 1.849 | 0.688 | 0.598 | 0.533 |
| Raw | 45.131 | 68.860 | 29.915 | 17.282 | 3.093 | 3.039 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375629 | 2062 | 2e-24 | 1894 - 1953 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_37559.1 | 1867 | 7e-23 | 1694 - 1753 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_37559.2 | 1870 | 7e-23 | 1697 - 1756 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_24325.5 | 1316 | 4e-23 | 1101 - 1160 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_24325.4 | 1586 | 4e-23 | 1371 - 1430 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_24325.3 | 1877 | 4e-23 | 1662 - 1721 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_24325.2 | 1809 | 4e-23 | 1594 - 1653 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_24325.1 | 1895 | 4e-23 | 1680 - 1739 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC50081 | 700 | 3e-25 | 64 - 123 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_48371 | 700 | 3e-25 | 64 - 123 | 100 | 60 / 60 | minus |
Contig Sequence (700 bp)
>U35_48371 700 Hv_44K_v2 TTTGTCGCTTAACAATACTTTCTCCCTTCAAAAAGAAAAGGAAAATTCTCGTAAAAAAGG AAAAAAAAACATCGATGCAACTGCCAAAAACACAAGTGTAAGGCAGTAACAGTTTTCATG GAGATCAACATGATCATATATCTCACACACTGGACACCAAAAACACGTAATGCATGCACA AATACACAAACTGTTCTTCACTCCGGCACATTTGCCGCAACCTTGGTATAGTAACAGCCT AACTAGTCCACCAATCGGACCTGAATGGATTGGTACACCGATGATGTGGCAGCAGCACAA GGCTGATTCAGATCCGAGTCGGCGACGACCAAGACGGAGTCCCCAGGTTTCACTGAACCC TTGGACTTGAGGAGCTTGATGGTTTGCTTGAAGTTATCGTCCATGTTATTTGACAGCGGG AGCTGGAGCGGGATCACACCCCAGTAAAGGTTCATGCTCTTTCTCGTGTTGGCGTCATCG GTGAACGCAAAGATGGGAGGGTTGGGCCGGTTGCGTGATAGGAGCGACGCCATGTGGCCA TGCTTTGTGTAGACGAAGATGGCGTCCACGGCAAGGTTGTTCGCCATTTCCACAGCACTG ATGCAAATCTGCTCCGAAATCCGGTCAGGCAGGGCTATTGCAAGCTGATATTGCGGAAGA AGTCGTTGCATGTTTTCCTCACGGCTCCATGATTCCATCC
Homology of Contig U35_48371 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g46910.1 | 549 | 1e-83 | protein|pyruvate kinase, putative, expressed |
| Brachypodium v1_2 | Bradi1g12750.1 | 541 | 2e-90 | |
| Arabidopsis v10 | None |