barSeed - Barley Seed Development Database

Probe CUST_36180_PI390587928

Source Contig U35_48372

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36180_PI390587928	Hv_44K_v2	CAGATTAAATTATAGCTAGTTAGCTACCATACAACTACATTTGCCAGGAAGCGCCATCAG	3	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360936	1776	2e-24	1694 - 1753	100	60 / 60	plus	None
MLOC	AK365301	2872	2e-24	2711 - 2770	100	60 / 60	plus	ABC41162
MLOC	MLOC_72190.1	810	2e-24	53 - 112	100	60 / 60	minus	None
MLOC	MLOC_72190.2	2071	2e-23	1 - 58	100	58 / 58	minus	ABC41162
MLOC	MLOC_72190.3	1645	3e-21	1 - 54	100	54 / 54	minus	ABC41162
JLOC1	JLOC1_48020.2	2127	8e-25	1918 - 1977	100	60 / 60	plus
JLOC1	JLOC1_48020.1	1722	8e-25	1513 - 1572	100	60 / 60	plus
Harvest21	ABC50082	673	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_48372	673	3e-25	4 - 63	100	60 / 60	minus

Contig Sequence (673 bp)

>U35_48372 673 Hv_44K_v2
AATCTGATGGCGCTTCCTGGCAAATGTAGTTGTATGGTAGCTAACTAGCTATAATTTAAT
CTGATGGGTATGCAACTGTCCGTCCATGGGAATTGTGGAGCATGAGATCTTACTGAATCT
GGCAGCCCTTGGTCTCTAGAGGGAAGAGGGCACAGGCAATTGCTGCAAGAAAGAGTACAA
GATCGAAGACAAACACAGCTTCTTTCTGATGACAGCTCTCTAACAATCCTACAGCTATGA
GTGGGGCAATCATGCCACCTATCCGGCCGAGAGAAGTCGCGACTCCCACTCCGGTGTTTC
GACATGATGAAGGGTAGATCTCAGGGCCGTAAATATAGAGAACAGCATAACTTCCAGTGA
TACTAGTCCGGGCACTGAATAGAAGGACGGTTGCTAAACCTTCTTCTAGAGGTGCAGCAA
GTGGAGCGATGGAAACAAGGCACAGAAAAGCAAACGCTCCCATTGACAGTTTGCGACCAA
CCTTGTCAACCAATAGAGCCGCCAAAATCAGACCAGGAAATTCCGCAATACTTGTCACCA
GGACATCTCTGTAGAGTCTGGCATCATTTTGCTGCCAGAAATGCATACCAACAGGTCCAC
ATCTCCTTGCACCATTGCTTAGTTCCGATGTTAGCAATACTATGCCATAGTAAGCAAAAC
AAAATGCAAAGTA

Homology of Contig U35_48372 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38400.1	519	1e-72	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi1g24060.2	492	1e-93
Arabidopsis v10	AT3G13050.1	500	6e-54	Major facilitator superfamily protein \| chr3:4176866-4178868 FORWARD LENGTH=500