barSeed - Barley Seed Development Database

Probe CUST_36153_PI390587928

Source Contig U35_7301

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36153_PI390587928	Hv_44K_v2	GCAGTCTTGTTTATATCGGACGCCAAGGATCCCTTCCACAATCGATTATGTATCCTATTA	1011	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362864	2509	7e-23	1060 - 1120	98	60 / 61	plus	ABC01962 ABC01972 ABC44247
MLOC	MLOC_6528.1	3390	7e-23	3227 - 3287	98	60 / 61	plus	None
JLOC1	JLOC1_4257.1	1010	4e-23	833 - 893	98	60 / 61	plus
Harvest21	ABC15428	1074	3e-25	1012 - 1071	100	60 / 60	plus
Harvest35	U35_7301	1074	3e-25	1012 - 1071	100	60 / 60	plus

Contig Sequence (1074 bp)

>U35_7301 1074 Hv_44K_v2
GCCATCACGTTGCTGGAACTCCGATAAGCGCGCGCCGCCGCCGACGACCCCAGACGCCAC
CTCCGAGCTGCCATCTGCGGGAAGAGCGGGTAGCTCGACCGATTCTGCGAGGACGAAGGG
GTGGACGAACGTACGAGGGCGTGGCCTGCACGTGACCACCGCGGCGAAACCAAAGAATGG
CGTACCGGGCGGACGACGACTACGACTACCTCTTCAAGGTGGTGCTCATCGGCGACTCGG
GCGTCGGGAAATCTAACCTCCTCACCCGGTTCACGCGCAACGAGTTCAGCCTGGAGTCGA
AGTCCACAATCGGGGTCGAGTTCGCCACCAGGAGCATTAGGGTCGACGATAAGGTCGTCA
AGGCGCAGATCTGGGACACCGCTGGTCAAGAGAGATATCGAGCAATTACAAGTGCATATT
ACAGAGGAGCTGTGGGTGCGCTTGTTGTGTATGATGTGACACGTCATGTTACCTTCGAGA
ATGTGGAGAGGTGGCTGAAGGAGCTCAAGGACCATACCGATGCCAACATTGTGATTATGC
TAGTCGGCAACAAGGCCGACCTGCGCCACTTGCGGGCTGTCTCTGTAGAGGATGCCAAGG
CATTTGCGGAGAGGGAATACACCTTTTTCATGGAAACCTCTGCCCTTGAGGCCATGAATG
TGGAGGACGCTTTCACTGAGGTGTTAACCCAGATCTACCGAGTGGTCAGCAAGAAAGCTC
TTGACATCGGGGACGACCCTGCGGCTCCACCGCGAGGGCAGACCATCAACGTAGGGTCCA
AAGACGATGTCTCTGCCGTAAAGAAGGCTGGATGCTGCTCATCCTAATCCGTATTGACCT
TGAAAAGTATACCGGGCCCTTGTTTTATCATTGATGATGGATGGGTAGCTGTGTCTTGGG
CGTGCTTTTGGAGCCCCAAAATTAACCCAGGGGGTTGGAAACGATATAAAACACTAACAG
TAATAGAATCAACAGCCGTTTTTTGGAGGCAGTCATGGTATCCTAATTGTTGCAGTCTTG
TTTATATCGGACGCCAAGGATCCCTTCCACAATCGATTATGTATCCTATTATAT

Homology of Contig U35_7301 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g15790.1	217	9e-138	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi3g35100.1	217	2e-141
Arabidopsis v10	AT5G60860.1	217	2e-132	\| Symbols: AtRABA1f, RABA1f \| RAB GTPase homolog A1F \| chr5:24484750-24485565 FORWARD LENGTH=217