barSeed - Barley Seed Development Database

Probe CUST_36147_PI390587928

Source Contig U35_7309

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36147_PI390587928	Hv_44K_v2	ACATTCAAAAGGTGTAATTGGTATGTCATGGTGCCCCTATGACAGTTCATTCTTGCTTAC	941	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364992	3957	2e-24	919 - 978	100	60 / 60	plus	ABC06281
MLOC	AK354341	3833	2e-24	998 - 1057	100	60 / 60	plus	ABC06281
MLOC	AK356588	2841	2e-24	899 - 958	100	60 / 60	plus	ABC01689 ABC43248
MLOC	MLOC_10432.1	3587	2e-24	521 - 580	100	60 / 60	plus	ABC06281
JLOC1	JLOC1_6831.1	3580	8e-25	521 - 580	100	60 / 60	plus
Harvest21	ABC16964	718	3e-25	622 - 681	100	60 / 60	plus
Harvest35	U35_7309	1038	3e-25	942 - 1001	100	60 / 60	plus

Contig Sequence (1038 bp)

>U35_7309 1038 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGCTCGGTACTCCTCGCCTCCATCCAGTCCAGATCGCGGAA
TTTTTTCCCCTCAGTGCAACGCCCCCCTGTCCTGCGGCGAGAGCGCGGCGCGGGCGGGCT
AGGCACCCAGATCTGGTGCGGCGGTCGCCGGAGATGGCGTGCATCAAGAGCGCGCAGCGC
GCGGCGCTGACGGCGCTCGCGCCGGAGGCGCCCTACATCGCCGCCGGCACCATGAGCGGC
GCCGTCGACATGCAATTCTCCGCGTCAGCCAACATCGAGATCTCCAGCCTCGACTTCCAG
TCCGACTCCCCCGACCTGCCCCTCCTCGCCGCGGCGCCCTCCCCCGACCGCTTCAACCGC
CTCTGCTGGTCCCGCCCGGGCGCCGCCGACGGCGACTCCTTCTCCCTCGGCCTCCTCGCC
GGCGGGCTCAGCGACGGCTCCGTCGCCGTCTGGAACCCGCTCAGCATGATCAGCTCCGAG
GGGCAAGCGGAGGACGTCATGGTCGCGCAGCTTGAGAAGCACAGCGGGGCGGTCACCGGA
TTGGAGTTCAGCGAGCTCACACCGAATCGGCTCGCTTCAGGGGGTAATGAGGGGGACATT
TGCATCTGGGATCTCAAAAACCCCTGCGAGCCAAACGTCTTCCCGCCACTGAAGAATGTT
GGTTCGAATGCTCAAGCTGAAATATCTTGCTTAACCTGGAATCCCAAGTTTCAGCATATA
CTAGCGTCAGCTTCTAGTAATGGGATTACAGTTGTTTGGGACTTGAGAACCCAGAAACCA
TTAACTAGCTTTTCAGATTCAAATAGGAGGAACTGTTCTGTTCTCCAGTGGAATCCAGAC
ATGTCCACCCAGCTAATTCTTGCATCAGATGACGACAACTCTCCTTCTTTGAGAGTATGG
GATGTGAGGAAAACCATTGCACCTGTACGGGAATTTGTGGGACATTCAAAAGGTGTAATT
GGTATGTCATGGTGCCCCTATGACAGTTCATTCTTGCTTACTTGNGCTAAAGACAATAGA
ACAATATGCTGGGATACA

Homology of Contig U35_7309 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g46370.1	1128	1e-150	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g19210.1	1121	3e-153
Arabidopsis v10	AT3G63460.1	1104	4e-103	transducin family protein / WD-40 repeat family protein \| chr3:23431009-23437241 REVERSE LENGTH=1104