barSeed - Barley Seed Development Database

Probe CUST_36145_PI390587928

Source Contig U35_7311

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36145_PI390587928	Hv_44K_v2	TGATACTCGATCAGGTTGTGATCTTCTAATGACGGAGCTGACCAAGGTCAAGGAGAAATG	84	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.801	1.588	6.653
Raw	2.724	2.825	2.442	6.789	4.735	28.891

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59073.1	1421	2e-24	1158 - 1217	100	60 / 60	minus	None
Harvest21	ABC15494	570	3e-25	85 - 144	100	60 / 60	plus
Harvest35	U35_7311	570	3e-25	85 - 144	100	60 / 60	plus

Contig Sequence (570 bp)

>U35_7311 570 Hv_44K_v2
ACCAGATAGCGCAAGAACAAGACTGAAGTCGATCCTCAACTGCTTTCCTTCATCCTTCTC
TGACGAGGTCGGTCGATCTGTTTGTGATACTCGATCAGGTTGTGATCTTCTAATGACGGA
GCTGACCAAGGTCAAGGAGAAATGGCGGCAGCAGGCCGACAAGCTGCAGCGTTGCGTCTT
CAACGATGGCGTCGTCGGAGCCCCCGACGGCGCGACGACGGCGCCGTGCTGGGACTGCAG
CATCTGCCTGGAGACGGCGTCGGAGCCGGTGGTGACGCTGTGCGGGCACCTCTACTGCTG
GCCCTGCATCTTCCGCTGGCTCACCACCTCCTCCTCCAAGTCCCGCGCCTCGTCCTCCTC
CGCTTGCTGCCCCGTCTGCAAGGCCGCCGTCTCCGAGGACCACCTCGTGCCGCTCTACGG
CCGCGCTCGCGCCGCCACCGTAAGCCCGGCCGAAGGCAGAGTCTGGCAGGTACAGCGTCG
TCCGCCGGCGACGGAGCCGAACGCGGAGCGCCTTGAGGGGCGGGACTCGGACGACGGCGG
CAGCTTCTACTACTACTACCACAACGTTGG

Homology of Contig U35_7311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None