barSeed - Barley Seed Development Database

Probe CUST_36144_PI390587928

Source Contig U35_7312

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36144_PI390587928	Hv_44K_v2	TGAGAATGTGTCGCCCTATGTGTATCATCTTTCTTCCATTACTTTCATCTCTCTGTCCAA	1066	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.416	1.360	1.036	0.944	0.411	0.404
Raw	872.888	1320.056	885.330	1271.112	195.016	207.568

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72191.4	898	2e-24	773 - 832	100	60 / 60	plus	ABC16102
MLOC	MLOC_72191.3	1254	2e-24	1128 - 1187	100	60 / 60	plus	ABC16102
MLOC	MLOC_72191.2	1263	2e-24	1137 - 1196	100	60 / 60	plus	ABC16102
MLOC	MLOC_72191.1	1292	2e-24	1153 - 1212	100	60 / 60	plus	ABC16102
JLOC1	JLOC1_48021.5	1313	8e-25	1107 - 1166	100	60 / 60	plus
JLOC1	JLOC1_48021.4	1305	8e-25	1099 - 1158	100	60 / 60	plus
JLOC1	JLOC1_48021.3	1642	8e-25	1436 - 1495	100	60 / 60	plus
JLOC1	JLOC1_48021.2	1325	8e-25	1119 - 1178	100	60 / 60	plus
JLOC1	JLOC1_48021.1	1317	8e-25	1111 - 1170	100	60 / 60	plus
Harvest21	ABC16102	1144	3e-25	1067 - 1126	100	60 / 60	plus	ABC16102
Harvest35	U35_7312	1144	3e-25	1067 - 1126	100	60 / 60	plus

Contig Sequence (1144 bp)

>U35_7312 1144 Hv_44K_v2
GCGCCTCCTGGAAGGTCGCCGCCGTCAACCTCCACCGGATCCCCTCTGAAGCCGCTGGAC
TCCTCGTCCCACGTCAACCCAGCCAATCCGCGACCTCTCCCGCCCACCACCAGTCTCCCC
CTGGCCCCGCCCACCACGCCGTCCCAGTAAGACTGAAGGGGAAAAAGAAGAACATACGTT
CTCTCTCCGGCGGGCCTATTTCTTCCCGATGCTCCGGATCGCCTCTCGCTCGGGTTTGCT
TGGTGGCAGGAGATGCTACAGCGCCGCCGCGAAGGGCGGGCTCTCAATCACTGGCGTCAG
TGACATCATTGCTGTCGCCTCGGGGAAAGGCGGCGTCGGCAAGTCCACCACTGCAGTTAA
CATTGCTGTAGCACTTGCGAAGGAGTTTAAGCTCAAGGTTGGTTTGCTAGATGCTGATAT
ATATGGGCCATCCATTCCCACAATGATGCATCTGCATGAAAAGCCTGAAACATGAGGATG
ATTCCAGTTGAGAACCATGGAGTGCGATGTATGTCCATCGGGTTTCTTGTAGACAAAGAT
GCACCAATCGTTTGGAGAGGTAATGAGTGCTCTTGAGAAGATGACAAGGGGAGTAGCCTG
GGGTAATCTGGATGTTCTTGTTGTTGATATGCCCCCCGGCACTGGTGATGCTCAACTATC
AATGTCCCAAAGGCTTCGGTTATCTGGTGCTTTAATTGTTTCTACTCCTCAAGATATTGC
TCTAATTGATGCTAGAAGAGGAGCAAACATGTTTCGTAAAGTCCAAGTTCCTATTCTAGG
CTTAGTAGAGAACATGAGTTGCTTCAAGTGCCCAAAGTGTGGTGAGAAGTCTTACATTTT
TGGAGAAGGTGGAGCCCAGAGAACTGCAGAAGACATGGATATGGAGTTTCTTGGCGAGAT
ACCTCTTGAAATTGACATCCGGACCGGTTCGGACGAAGGCAACCCAATTGTGATATCGTC
ACCCAACTCTGCATCGGCGCAAGCCTACCTACGTGTAGCTGAGAAGGTGACACAGAGGCT
CAAGGACTTAGCCGAGGAGCGACTGATGGCCCCAGAAATTTCCCTTTGAGAATGTGTCGC
CCTATGTGTATCATCTTTCTTCCATTACTTTCATCTCTCTGTCCAACCATTCTGCGTTAA
AAAC

Homology of Contig U35_7312 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g42880.1	169	2e-101	protein\|nucleotide-binding protein-like, putative, expressed
Brachypodium v1_2	Bradi1g14340.1	293	9e-161
Arabidopsis v10	AT4G19540.1	313	1e-96	\| Symbols: INDL \| IND1(iron-sulfur protein required for NADH dehydrogenase)-like \| chr4:10657517-10659094 FORWARD LENGTH=313