barSeed - Barley Seed Development Database

Probe CUST_36143_PI390587928

Source Contig U35_7313

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36143_PI390587928	Hv_44K_v2	GAAACTGTTAAATCTGAGGCATTGGTTGATCGTCACTCTTGTACAGCCTTTTGCAAAAAA	975	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.815	1.844	1.111	0.884	0.439	0.482
Raw	1281.617	1968.390	1074.186	1341.330	235.399	281.803

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75840.3	849	3e-21	796 - 849	100	54 / 54	plus	ABC19071
JLOC1	JLOC1_50585.1	1035	5e-22	778 - 832	100	55 / 55	plus
Harvest21	ABC19071	1048	2e-22	976 - 1030	100	55 / 55	plus	ABC19071
Harvest35	U35_7313	1046	3e-25	976 - 1035	100	60 / 60	plus

Contig Sequence (1046 bp)

>U35_7313 1046 Hv_44K_v2
GCTATTTTGGAGGAGAACACGAAAACTTTGAGGAGTAAAGCCTACACTTTGGAAGAGGAA
AACAAACTCACCGAAGCAATGGAAAATGACATCCAGCTTTTAAGGAATGAAGAGTCCTAC
TCTGAAAGCAACATATATATAATGGAAGATGAGGTGCAAACCCTGCAGCAAGAAGTCAGA
AAGATAAACAACATTGCATACACCATAGAATCACTGGCAATTGATGCTGAGAAAAGGGTA
GAGTTCCTGAGTTCGGAAGTCAAAAAGATTGAGAGTATAATTACAGAGCAATGGATCCAA
ATAAGGCAATTTGAACAAGCATTTGTTGTAACAAAGATGATGACTTCGAAAGTTTATAAA
AGGAGGTTATCTGAGGGTGCCTACAAATGGCCTGGAATGGACATACTTCTGAAGTATGTC
AGGAATGTTGATCTACATGGCGTGTTTCTTGCGGGGGTATCGCACACAAGGACCTGTGTT
TCTCATACTTACAAACACTGCAGGAGTTTCATACAAGTAATGAAGAGATGCTACCATAAG
GCTTCCAGGTTCCACAAAGCAATACAGTACCACTGCTCTCCTGATGATGATGGGCCTAAT
GCCTTCTTCTTGGGTGGGTCCATCTCAAAATCATGCATTTCTCTTCCTTATGAGAAATTC
AAGATTTCCATTTCATCAGCACAACAACTTCACTACGAGGTTCAAGTGTATCTTCAAGAC
GCAATGAGATCCAACAGTTATAGCAGAGGTCTAGCAAGTGAGCCAGTCACATTCTGCCTG
GCGTATCTGGTCGTCATATTTCCGTTGTGGATCACGTGGTTCATTTTCTCGACACGATTT
GGCTTGAAGATGTGAAGTACTGGCTGGAGCATCACAGTTTTGGCCATCTACTTTTACCTT
GGACGAGTATAGAGGAGTTGAGATTATCAAAGCGTGAAATATAGGCTGTATTTATCTACA
TCTTGTAATTACGATGAAACTGTTAAATCTGAGGCATTGGTTGATCGTCACTCTTGTACA
GCCTTTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g20270.1	379	3e-119	protein\|expressed protein
Brachypodium v1_2	None
Arabidopsis v10	None