barSeed - Barley Seed Development Database

Probe CUST_36140_PI390587928

Source Contig U35_7316

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36140_PI390587928	Hv_44K_v2	GACCGTGGAACCGCATAAACAATGGAATCTAATTATGTGGCAATTAATTTTGAATCCTAT	574	GeneList: sienna3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.187	2.595	0.716	0.850	0.784	0.939
Raw	90.305	66.355	16.544	32.774	9.835	12.900

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19884.1	795	7e-23	726 - 785	98	59 / 60	plus	ABC20750
JLOC1	JLOC1_13784.1	696	4e-23	583 - 642	98	59 / 60	plus
Harvest35	U35_7316	642	3e-25	575 - 634	100	60 / 60	plus

Contig Sequence (642 bp)

>U35_7316 642 Hv_44K_v2
CAATGCCGCCGCGCCGAGCGTCCGCCCGTCCATAAATAACGCAGACAGCGAGTCGTCTTC
AACCCACGGACTCCATCCATCGATCGCCACCGGAGAGCCAGGAGCAGCAGCAGCAGCAGA
GCAGTCGACCGAGCGAGCGAGCGCGACGATGTGCTACCAGGTGAAGTGCGGGACGTGCGG
CAAGTCCACGTGGGCGGGGTGCGGCCGCCACGTGGCCTCCGTGCACCGGCAGATCCCAGA
GGGCCAGCACTGCGCCTGCCGCGACTGGCCGGGCGTCTCCGCCGGCGACAAGCCCGCCGG
CTCCACATCCGGCGCCGTCGAGGAAGCTTCCTCCTCCACCTGCGCCATCCTGTGAGGCGC
CGGTCGCCGCCGGCCGTGCCCGTCCGTTGACTCTCCGGCCGGATCCAAGCCGTGGCGGCG
GGCGCGTAGATTCGTGTGTGGCATGGCCTCATCCCCCTCTAGTAGTATTATACCCGCTAT
CGTGTAATAATTCTGGATTGGAACCACGCAATAATCGATCGGAACTCTTTTGTTGTTTTT
CCTCTTGTGTGTTGGTCGAAGCAAGGAAGGAACTGACCGTGGAACCGCATAAACAATGGA
ATCTAATTATGTGGCAATTAATTTTGAATCCTATTTTTTCGT

Homology of Contig U35_7316 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None