barSeed - Barley Seed Development Database

Probe CUST_3613_PI390587928

Source Contig U35_42403

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3613_PI390587928	Hv_44K_v2	TACGGCATGCCCTGACTCATTTGTACAGTGATGAGACATTATAAGTCGTCCTAATTTGAT	617	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20680.8	1998	2e-24	946 - 1005	100	60 / 60	minus	None
MLOC	MLOC_20680.9	1757	2e-24	626 - 685	100	60 / 60	minus	None
JLOC1	JLOC1_14339.4	2062	8e-25	1069 - 1128	100	60 / 60	plus
Harvest21	ABC38055	677	3e-25	618 - 677	100	60 / 60	plus
Harvest35	U35_42403	677	3e-25	618 - 677	100	60 / 60	plus

Contig Sequence (677 bp)

>U35_42403 677 Hv_44K_v2
CCTATCTCAGCTTCGCCCCGCTCCCTGCAGATGACCTCGTTGATTTTGCTTCTGAACTGA
AGCTATCATTTTTCCAGCTGGGAATCAGTCATCAGATATCAGCATCGATTGTGATGCAGG
TTCTTTGCCATGTTCTTCCATCACTTGAAAAGATTCGCAAGGAAGGATTAGACGGGCATG
AGAAGATCAAAAGCTATATGTGTGTTTAGTTGTCTATCTTTAACAGTGAGATTGAATTTC
TCTTGGGAACTGTTCCATTTTCTATAACCTCATCTAGTCTGAGCTCCTCCATCTTGATGT
CTAGATGGTGGCTATCACTGGGTTTTGCAATTGTGGCTGCTTGTACTGTGTCATGCTATT
CGCTGCAGTACTCCATATATGCAGCAAGTTACAGGTAAATTACCTTTTATGTGTATATGA
TATGATACTTTGGCTTCTGTTTTGCTCGTATCTGGCAAGCTTGCTGAAGTGCTCCACCAT
TGGCCACATCATGCCTGTTCCTTTGATTTTTTCCTTTTCTTTTGCCATACATCTATGGAA
GATGGAGGCACTTTAAAATTAGAATTGGCACAAATGTATGCTGTTATCAGAGTTTGCATA
TAACTTATCATTTGATTTACGGCATGCCCTGACTCATTTGTACAGTGATGAGACATTATA
AGTCGTCCTAATTTGAT

Homology of Contig U35_42403 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None