barSeed - Barley Seed Development Database

Probe CUST_36136_PI390587928

Source Contig U35_7320

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36136_PI390587928	Hv_44K_v2	CCACCATCAACAATAATAAGGTGTTATGCTTCCGTATGAAAAGAATGTAAAATGAGTTGG	476	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33165.1	378	7e-23	204 - 263	98	59 / 60	minus	ABC16131
JLOC1	JLOC1_21523.1	359	4e-23	186 - 245	98	59 / 60	minus
Harvest21	ABC16131	587	3e-25	52 - 111	100	60 / 60	minus	ABC16131
Harvest21	ABC16130	584	1e-23	477 - 536	98	59 / 60	plus
Harvest35	U35_7320	587	3e-25	477 - 536	100	60 / 60	plus

Contig Sequence (587 bp)

>U35_7320 587 Hv_44K_v2
CGCAAATCTCCAACCTTCGACCTTTGCGCCCCCATTCGATATCTCTCCTCTCCTCCTAGA
AGCTTCCATGGCGCCCAAGGCTGAGAAGAAGCAAACAACAAAGAAGAAGCTGATGGAGTT
GGAGAAGAAGGCCCAGGTGGAGAAGCGTATGCCCGGGAAGGAGGGCGACACTGACAAGAA
GAAGCCTAAGAAGAGCAATGATACATACAAGATCTACATCTTCAAGGTGCTCAAGCAGGT
TCACCCAAACATGGGAATCTCCTCCAAGTCAATGTCCATCATTAACTCAATCATCACTGA
CATCTTCGAGAAGCTCGCGAGTGAGTCGGCAAATCTCGCTCGCTACAACAAGAAGCCCAC
CATCACCTCCCGGGAGATCCAGACCGCTGTGCGCCTTGTCCTTCCAGGCGAGCTTGCCAA
GCACGCTGTCTCTGAGGGAACCAAGGCCGTCACCAAATTCACCATGTATTAGGTCACCAC
CATCAACAATAATAAGGTGTTATGCTTCCGTATGAAAAGAATGTAAAATGAGTTGGATTT
GTTAATAAATGAATCATCTCATGTTTGTTTGAAAAAAAAAAAAAAAA

Homology of Contig U35_7320 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None