barSeed - Barley Seed Development Database

Probe CUST_36125_PI390587928

Source Contig U35_7332

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36125_PI390587928	Hv_44K_v2	AGGCTTCCTATAGTGCTCGGGGCCTATACAGAACAGTTCAGGAAGGATTTCACACTTTTT	588	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_71432.2	1066	2e-24	532 - 591	100	60 / 60	minus	ABC32435
MLOC	MLOC_71432.1	1502	2e-24	576 - 635	100	60 / 60	minus	ABC32435
JLOC1	JLOC1_47476.1	1273	8e-25	560 - 619	100	60 / 60	plus
Harvest21	ABC16111	643	3e-25	580 - 639	100	60 / 60	plus
Harvest35	U35_7332	652	3e-25	589 - 648	100	60 / 60	plus

Contig Sequence (652 bp)

>U35_7332 652 Hv_44K_v2
GGTTCTCTTCGGTTAAGGTCTTCGGAGGTTGGGCCTGCTACATGCAAATCAATGGCCTGC
AAACAAACGGGGCCGATTATGAATCAAGGACATGGGGAAACTAGTTATGCCCACAACTCT
AGTATTCAGAACGCTGAGCAGAAGAAGATGAAAGCCCTGATTGAAGCGGTCATCGTAGAA
CTATGCAGCAACACCGGCACCTTGCTGTCCGGAAAAATGGTGATCGCGGACTTGGGCTGC
TCCACTGGTCCAAACGCGCTTGCACTGGTGTCGATTGCTATTGAGGCAATCCACTCTCAC
TGTCTTCAGTTCCAGCAACCACCACCAGAAGTCTCTGTGTTCCTTAACGATCTTCCTGAG
AATGACTTCAACACGGTGGTGAAGAGCCTCGTCACTCTCCGTCAAAGCAACGATCCTGTT
GTCGTGGCCGGTATCACACCAGGATCGTTTTATGAGCGGCTCTTCACTAGTGAATCTGTG
CATCTTGTTTGCTCGTCCAATAGCTTGCATTGGCTCTCGAAGGCTCCAGAAGAACTAACA
AGGAATCTCATCCCAGCATATGACATTGATGAGCATTCCAGGCATGAAAGGCTTCCTATA
GTGCTCGGGGCCTATACAGAACAGTTCAGGAAGGATTTCACACTTTTTCTGG

Homology of Contig U35_7332 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g20920.1	370	2e-78	protein\|SAM dependent carboxyl methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g57790.1	357	2e-99
Arabidopsis v10	None