barSeed - Barley Seed Development Database

Probe CUST_36115_PI390587928

Source Contig U35_7343

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36115_PI390587928	Hv_44K_v2	ACATATGAAAAAATACTGTAAAGTCCAAACTGACTCGGACATCAGGATGTAAGTGGGCTG	994	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364248	2379	2e-24	2213 - 2272	100	60 / 60	plus	ABC29770
MLOC	MLOC_40056.4	1998	2e-24	1832 - 1891	100	60 / 60	plus	ABC29770
MLOC	MLOC_40056.3	1900	2e-24	146 - 205	100	60 / 60	minus	ABC29770
MLOC	MLOC_40056.2	2125	2e-24	167 - 226	100	60 / 60	minus	ABC29770
MLOC	MLOC_40056.1	2062	2e-24	192 - 251	100	60 / 60	minus	ABC29770
JLOC1	JLOC1_26170.1	2037	8e-25	1841 - 1900	100	60 / 60	plus
JLOC1	JLOC1_26169.1	2039	8e-25	167 - 226	100	60 / 60	minus
Harvest21	ABC29770	328	3e-25	97 - 156	100	60 / 60	plus	ABC29770
Harvest35	U35_7343	1226	3e-25	995 - 1054	100	60 / 60	plus

Contig Sequence (1226 bp)

>U35_7343 1226 Hv_44K_v2
GAACGAGTTGAGCTGAACTGGCTCCCTCAACTCACAACAATGGTCTTTGATGGTTGGCTA
CAATTCCAAGATCCACTGTTCATTGGTCATGTCCCATTGCTGGTGGTTGTAAGCCTCACA
AATCTTGCCTTTAGTTTCAACAAGATGGTGTTGTTAAGTGAGTTTCTTAGCGGTACCTCT
ATACGAGATCTGAAGTTGGCATTTAATTCTGAAAAGATTTGGGTACAGCCAGAATGTCCG
ACGCCATGTCTGGCATCTGTTTTCCGCCAACTAAGGTTTGTGAATCTACTTCATCTTCCT
GAAGGGTATGATCTCACGTGGACAATGTATTTTCTTGAAGCTGCGCCCTTACTGAAGGAG
CTATACATGACGGTATGGGATCATGCGTGTAATATGGAAATGGACGAGGAGAAGAGGAAA
GAAGACTTGTATAGTGAGAACAGGGGTGTAGAGTGGGACTTGGTGGCAGCAGATTTCCAA
CACCAAAGTTTGGCCACACTCGTCATTTTTGGCTTTGAATCTGAAGATTGCTTTGTGAGT
TATTTGAGGCGTGTTCTGGTGGCGGCGGTCAATCTAGAGGATGTGTTCCTGTATAGTAGG
TTGGAGTGTGGCAGTTGCGAGGAGAGGAAGCTTGGCAGGTACCCCTGGACTAAAAGGCAG
AGGATCTCCATGAAGAAGAGACTCACCACTGGGATCGAGTCGTTTGCGATATTTCACTAT
GGTGAGATGAGGCCTGGTCATGTAGCAAAAATGGAGTACCCAGAGTGCTCAATTATCGAG
GGAAAAAAGGGTTATCGCTGACGCAAAAAGGTGTTGATTTTAGCTACCCAGTAGTATTAG
GTGGTGCTTGCTTGCATGGTTACTGCAGTCGGGAATGGAAGCTAATGGCATGGACCAGGT
AAAACTCAGTGAGCAGTGTAACGCAGACAAAGGTCATCAAGCAGAGTAACACAGACAAAA
GTCATCAAGCAGAGTAACGCATACTCATCATGAGACATATGAAAAAATACTGTAAAGTCC
AAACTGACTCGGACATCAGGATGTAAGTGGGCTGTTTGTTGGACGCTCTTGGACTTGACC
ACATTGCCCATCACTTTTTACGTGGGATTAAGTGGTAGCCCAGTTAATTTTTATGTGGGA
TTTATGACGTCCATATACTGCAACATTCATACTTTTATAGTATTTCTGAGATAAAAAATA
CTGTCCATATAAAAAAAAAAAAAAAA

Homology of Contig U35_7343 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g55050.2	478	3e-82	protein\|OsFBX64 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi3g56087.1	489	1e-104
Arabidopsis v10	None