barSeed - Barley Seed Development Database

Probe CUST_36113_PI390587928

Source Contig U35_7345

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36113_PI390587928	Hv_44K_v2	CACCGAATTGGGGGTTTACTGAAGTACGAGTATAATAGATTGAGCAATCAGCACGGAGAG	656	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.954	4.118	1.553	0.571	0.163	0.184
Raw	184.191	394.752	127.655	73.300	6.892	9.071

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7729.1	184	7e-23	37 - 96	98	59 / 60	minus	ABC21229
JLOC1	JLOC1_5102.1	1382	4e-23	1304 - 1363	98	59 / 60	plus
Harvest21	ABC21229	755	3e-25	657 - 716	100	60 / 60	plus	ABC21229
Harvest35	U35_7345	755	3e-25	657 - 716	100	60 / 60	plus

Contig Sequence (755 bp)

>U35_7345 755 Hv_44K_v2
GCTCGCGCCGGTGGGCAACTACTGGTGGTCGGGCCTGCCGGCGGAGGTGTACCAGGAGGC
GTGGTACGCGCAGTTCCCGCAGGACCGGGTCGCCGTCTGGATCGCCCACCACCTCCCGTG
GCTGACCAACTGGTGGAACACCCAGCGGCTGTTCCCAAGCTCCAGCGTCAAAGCCCGGAA
CCCCACCATCTACTCCAGGGAAGACAAGCCGCTCACCGTCAAATTCGCCCAGCGAGCCCA
CAATAAGCAGGTCACGCAGCAGGGGGAGCACGAGTCCCTGCACCGGGACATGATCGTCGG
GTTCGGGAAGTGGGGATGGAGCCCGCTGCAGCCGGACAACCCGTTCGCCGGCGTCGGCGA
CGAGGTGAAGGTGCATCTGTGGCACGTGGTAGAGGATTTGTTCGTGCCTGTCGCCCTGTC
GCGGCACCTCAGCAAGAGGCTCCCCTGGGTGATCTACCACGAGCTCCCGACAGCCGGCCA
CCTGTTCCCGGTCGCCGACGGAATGCCCGATGTCATCGTCAAGTCGCTGCTGCTCGGAGA
CGAGTGATGACGTTTCCGTTTTCTCTTGAGCGAGAATGAGAGATGAGCTGTTAGTAGGAT
TTCGAATAAATTCATCACCTTGCCCTTGAATTATGAACGACCCTTTGAATCTCTGACACC
GAATTGGGGGTTTACTGAAGTACGAGTATAATAGATTGAGCAATCAGCACGGAGAGTACA
AATAAACAATCCCTGATTTAATAAAAAAAAAAAAA

Homology of Contig U35_7345 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g32970.1	373	2e-87	protein\|hydrolase, alpha/beta fold family protein, putative, expressed
Brachypodium v1_2	Bradi5g09290.1	360	7e-87
Arabidopsis v10	AT2G36290.1	364	2e-59	alpha/beta-Hydrolases superfamily protein \| chr2:15208867-15210768 REVERSE LENGTH=364