barSeed - Barley Seed Development Database

Probe CUST_3610_PI390587928

Source Contig U35_42404

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3610_PI390587928	Hv_44K_v2	TGTTCGAGTTGGTACCTGCCGTGGCTTTCAATGCGAATTTGAAGTATGATTATAACATCG	600	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.947	1.518	2.468	2.341	0.531	0.498
Raw	17.929	45.474	64.837	97.067	7.766	7.834

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14859.1	1671	7e-23	930 - 989	98	59 / 60	minus	None
JLOC1	JLOC1_10150.1	1637	4e-23	669 - 728	98	59 / 60	plus
Harvest21	ABC38056	660	3e-25	601 - 660	100	60 / 60	plus
Harvest35	U35_42404	660	3e-25	601 - 660	100	60 / 60	plus

Contig Sequence (660 bp)

>U35_42404 660 Hv_44K_v2
GCGGATTGGAGCACCCAACGCCGGCGCTCTCGCCGCTGCTCTCGTTGCCGTTCGCGCGCC
ACGCATCAGCTGATTAGCCGCTCGTTGCCTCCCCGGAGATGGCGGCGGGATCTATGGAGA
CTGCCCTCATGAGCGATCCGACGGCCAAGCTCCCCGACGACCTCCTGGTGGAGATCATGT
CGCGCGTGCCGTACAAGTCCACCCGCTGCTGCAAGTGCGTCTCCACGCGCTGGCGGGACC
TCATCTCCCACCCCGACCACCGTGACAAGCTTCCCCGGTCGACCCTCGCCGGCTTCTTCT
ACAAGACCTACGACATGGACAGCCGTCCATTTGGATCTCATGGTTACAGCAGCGTCTCAG
GGAACTGGTGTCCTATTGACGCCTCCCTCTCATTCCTGCCCAAATGCAAGGAGCTCGACT
TGTTGGACTGCTGCAACGGCCTTCTCCTCTGTCGATGTTCGAAGCCTTATCCTGAGACGC
CAGATTACGTGGTGTGCAATCCTGCCACTGAGAATTGGGTAACTGTCCCTGCCAACGAAT
GGTCCGAGTTCTCGTATGCTCGCCTGGGATTCGACCCTGCCGTCTCCTCACATTTCCATG
TGTTCGAGTTGGTACCTGCCGTGGCTTTCAATGCGAATTTGAAGTATGATTATAACATCG

Homology of Contig U35_42404 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g59890.4	322	3e-58
Arabidopsis v10	None