barSeed - Barley Seed Development Database

Probe CUST_36107_PI390587928

Source Contig U35_7352

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36107_PI390587928	Hv_44K_v2	GACAAGGGCTGATTGTTGTTTAATCTCAGCCAAACACTTGATGAGTTACATTATGGGAGG	831	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72746.6	973	2e-24	812 - 871	100	60 / 60	plus	None
MLOC	MLOC_72746.3	1383	2e-24	913 - 972	100	60 / 60	plus	ABC37967
MLOC	MLOC_72746.4	1447	2e-24	977 - 1036	100	60 / 60	plus	ABC37967
MLOC	MLOC_72746.5	1386	2e-24	916 - 975	100	60 / 60	plus	ABC37967
JLOC1	JLOC1_48408.2	1337	8e-25	690 - 749	100	60 / 60	plus
JLOC1	JLOC1_48408.1	1400	8e-25	753 - 812	100	60 / 60	plus
Harvest21	ABC50146	680	3e-25	337 - 396	100	60 / 60	minus
Harvest35	U35_7352	1223	3e-25	832 - 891	100	60 / 60	plus

Contig Sequence (1223 bp)

>U35_7352 1223 Hv_44K_v2
AATCTTGACCTCCAGCGCACCGCCACCTCCTGCCCCGCCTGACCCCGGCGACGGTCGATC
CGGTGTTGCGCCGACCGGCGATTGGGAAGACCAAGACGGTGTCCCTGCTGCGGCAGCTCT
ATGACGCCGGCCACCGTTGCTTCGGCGAGAACTACGTCCAGGAGTTCGTCACCAAGGCGC
CGCAGGTGAGGCCACCTCCTCCGGATTTTACTGGATTGGATTGGATTGGGTGGTTGGATC
CTCGTCTGTTTGCTGGTTGCAGAGCAACAAGGTGAAATCGCTACTAGGTATGGTCAGTGT
CTCACAATCTTTTCCCCTTCGATTCCCTGGTGACGGCCACACGAGAGATCGAGACGGCCG
GCGGACGCAGGTAGGGGTGGGCTCGGGCGGGAGGCGCGGTCGGCTGGACGGCGGAGTGGT
AGCCACTCACGAGAGGAGACAGAAAGTGCTCCTTGCCGTGGCGGCGCCCCCATGTGCGTC
GACTGCGGGTTCCTTGGCGCCGGGGCTCTCAGGCCCAGGGGAGGACGGNCGGCCGGGCGC
AACCTCGAACGCAAGCCAGCCCCGCTTCTTTCATGGCGGCGAGCTGCCGGCCATCCGATT
CAGGCGTCCTCTGGAGAAGACCGCGACCACTAATGCAATAAAAGAGATAAGGAACCTTCA
ATCTCTAAGTTGCTGTTGACACAGAAGATTAGTTTTAGTCTCTCAATTGGTGATGGATGT
GGTCTGCGGCTCCTACAGTATCTCAAGGTTTACTGGATTGTACATAGAAAGTCATTTTGC
TCTAATTTGGAGCATCAGCTACAGGCTCATCCAAGGAAAGGAAGATATGATGACAAGGGC
TGATTGTTGTTTAATCTCAGCCAAACACTTGATGAGTTACATTATGGGAGGATCAGATTC
ATTGGCTAGCTGCACTAGCATGGCCCCAATGGCGGTGCTGGAGGTACCGCTGCTTGCGCC
TCTGGCCATGCCAGCCTGATGCTGTACATGCTGGTCAACGTGATGTTGTCAGCCACCCAG
ATTTTGTGCAGTTAGCTCGGCAACTTCTAGTGCCCCGCCGCCTTTCTCAACAGCCACGGC
ACCGAGTGTTTCATCTACGCCTGATGCACTTCCATAGTATATAATATTAGATATACACAA
TCATAGATGCATATATGATCTTCCACCTTGAGCTNCCTGTACTGATAAGATTTGTGTTGA
TACATGATNCACAACAAAGTGTA

Homology of Contig U35_7352 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None