barSeed - Barley Seed Development Database

Probe CUST_36102_PI390587928

Source Contig U35_7357

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36102_PI390587928	Hv_44K_v2	AAACTTGCCGTGGCTACTTCCTGATCTCAAACTTCATGTCATGGACTTCTTTATTGCCCC	814	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.781	0.928	1.853	1.874	1.236	0.898
Raw	4.959	9.166	18.441	32.320	6.113	4.331

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17206.1	2737	2e-24	876 - 935	100	60 / 60	plus	ABC21425
MLOC	MLOC_17206.2	2457	2e-24	876 - 935	100	60 / 60	plus	ABC21425
JLOC1	JLOC1_11883.3	2572	8e-25	826 - 885	100	60 / 60	plus
JLOC1	JLOC1_11883.2	2852	8e-25	826 - 885	100	60 / 60	plus
JLOC1	JLOC1_11883.1	2592	8e-25	826 - 885	100	60 / 60	plus
Harvest21	ABC16176	920	3e-25	815 - 874	100	60 / 60	plus
Harvest35	U35_7357	920	3e-25	815 - 874	100	60 / 60	plus

Contig Sequence (920 bp)

>U35_7357 920 Hv_44K_v2
GGGTTATACCCAGCCGCCGTCAAGCCGGCACGGACGGAACGCCGCCGCCCTCGAAGACCG
ACAAGGGGCTCGTTAACCTCCCGAACTCTATCCAAGGCAGCTGATTTTCAAGATCCGCTG
TTGTTCTGCGGGTGGAAGAGCGTCCCTTTTACAGGGATTTGGCAAGACGGCGGTTGATTT
TGAAGGCCGTGAGATGATCCTTTTTACAGGCTGCAATCCCCTCCTCCACCAGCAATAACA
ACGTGTGGATGTGGATTTACCACGCGGTCGCACATACTCGTAAATAAATTATATAGTCCG
TCTTCTTCCAGCTTAAATCATTGTGTCAACGCGGTCGTCGGGCTGTTGTGTGTACGATCC
GGTTTCATCTCAGAGAGAGAGAGAGAGAGAGAAGTCGGGAATTCTCGACTTTTGCCTCCT
CCTCGTTGTCAGAATATTAATACAGACGAGCGCTCCGGAAATAAAAGACAATCGCTTTGG
AAGGCATACTGGACTCAGAGGAGGTTATTATTCGGTTTCATCTAATAAGACAAGTCCAAG
ATTCTCTACTTAGATTCTGGTCGGTTTAGAGCATCGTAGTTCTCTCATCCTCTCTGAATA
AATAGAGACCAGAGCTCCCGGAATAAACGATGAGCGCGTTGTTCAGGGCTCCCTGGACTC
GGAGGTTATTATCCATGGAGTCTGATAGTCCGCACCGCCACAAAGGTGAGGAAGATAGGC
TCAGCGCGTTGAGTGATGACATTTTAATCTCTATCCTGGGGAGAGTCGACCTTGCCATGG
CAGCAAGGACTAGTGTGTTGTCAACGCGGTGGAGAAACTTGCCGTGGCTACTTCCTGATC
TCAAACTTCATGTCATGGACTTCTTTATTGCCCCATGCACAGGGGCTGCACACATTGATC
AAGCAATGGCGTCTCTGGCA

Homology of Contig U35_7357 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None