barSeed - Barley Seed Development Database

Probe CUST_360_PI415269222

Source Contig CV062067

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_360_PI415269222	Hv_44K_v2	GTCAAGTAATGCTGCAAAACCTGTAAAAGCTGTGAAACAAAACAGTTTTAATTGCAGCAT	650	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.061	0.304	1.376	1.744	1.006	1.003
Raw	139.383	1074.692	4327.223	8235.877	1688.645	1861.797

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369485	2776	7e-23	2694 - 2753	98	59 / 60	plus	None
JLOC1	JLOC1_38605.1	2710	8e-25	2570 - 2629	100	60 / 60	plus
Harvest35	U35_22777	414	6e-22	308 - 367	97	58 / 60	plus

Contig Sequence (731 bp)

>CV062067 731 Hv_44K_v2
TCCCTCAAGGATTACTTCAACCCGGTCNATGTGCTCTTCCAGGGGGAGTTCTACATCAGA
GGGCCGTTCCAGACGTTGGCGCTCTTCGTCGTCGTCGTCATCGCCACGGTGGAGCTCATC
GGCATGGTGGAGATCAGGTGGGCAGGCCTCACGCTGCTCGACTGGGTCCGCAACGAGCAG
TTNTACATCATCGGCACCACCGGCGTGTACCCGATGGCCATGCTGCACATCCTCCTCAGG
TCCCTCGGCATAAAGGGGGTGTCCTTCAAGCTGACGGCCAAGAAGCTCACGGGGGGCGCC
AGGGAGAGGCTCGCGGAGCTGTACGACGTGCAGTGGGTGCCGTTGCTGGTGCCCACCGTG
GTGGTCATGGCCGTGAACGTGGCCGCCATCGGCGCGGCGGCGGGCAAGGCGATCGTTGGG
CGGTGGTCGGCAGCGCAGGTCGCGGGGGCGGCGAACGGGCTTGTTTTCAACGTGTGGATG
CTGCTGCTGCTCTACCCGTTCGCGCTCGGGATAATGGGGCACTGGAGCAAGAGGCCCTAC
ATCCTGTTCCTTGTGCTGGTGACCGCGGTCGCTGCCACCGCGTCCGTGTACGTCGCACTC
GCGGGGTCCTTGCTGTACTTGCATTCGGGGATAAAACTAGTTTAATTTTTGTCAAGTAAT
GCTGCAAAACCTGTAAAAGCTGTGAAACAAAACAGTTTTAATTGCAGCATATAATAAAGT
TTACCTTGATG

Homology of Contig CV062067 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36630.1	887	4e-60	protein\|CSLF8 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed
Brachypodium v1_2	Bradi3g45515.1	872	6e-72
Arabidopsis v10	None