- Probe CUST_36099_PI390587928
- Source Contig U35_1502
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_36099_PI390587928 | Hv_44K_v2 | CAGCATGATTCAGTGGAGAGTATAGACATATGTGAGATTGATCAGCTAGTTATTGATGTT | 669 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK355320 | 1971 | 6e-24 | 248 - 306 | 100 | 59 / 59 | plus | ABC01210 ABC04092 ABC04095 |
| MLOC | MLOC_34756.4 | 1783 | 6e-24 | 767 - 825 | 100 | 59 / 59 | plus | ABC01210 ABC04092 ABC04095 |
| MLOC | MLOC_34756.2 | 1336 | 6e-24 | 646 - 704 | 100 | 59 / 59 | plus | ABC01210 ABC04092 ABC04095 |
| MLOC | MLOC_34756.5 | 1649 | 6e-24 | 711 - 769 | 100 | 59 / 59 | plus | ABC01210 ABC04092 ABC04095 |
| MLOC | MLOC_34756.1 | 1954 | 6e-24 | 882 - 940 | 100 | 59 / 59 | plus | ABC01210 ABC04092 ABC04095 |
| JLOC1 | JLOC1_22445.5 | 1982 | 3e-24 | 718 - 776 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_22445.4 | 1644 | 3e-24 | 602 - 660 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_22445.3 | 1741 | 3e-24 | 611 - 669 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_22445.2 | 1770 | 3e-24 | 644 - 702 | 100 | 59 / 59 | plus | |
| JLOC1 | JLOC1_22445.1 | 1818 | 3e-24 | 637 - 695 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC04094 | 747 | 1e-24 | 671 - 729 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC04092 | 1644 | 1e-24 | 566 - 624 | 100 | 59 / 59 | plus | ABC04092 |
| Harvest35 | U35_1502 | 747 | 3e-25 | 670 - 729 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_39481 | 691 | 1e-24 | 621 - 679 | 100 | 59 / 59 | minus | |
| Harvest35 | U35_1500 | 1643 | 1e-24 | 566 - 624 | 100 | 59 / 59 | plus |
Contig Sequence (747 bp)
>U35_1502 747 Hv_44K_v2 GCGCCGTCCGCGTGTACGTCCACAGGTGAGAGCTAGAAAAGCTCCTAGCCTAGGTGCGCA CTCGTTTCTTCTTCTGGCGCCTGCCCAGGTTCACTTCCCAACCACGGCGGTGCTCCGTCG CGTCCAGGTTTTCTTCCGGGTGCTCTCTCACGCCAGAGAGGCTGGGAACTTTAAAGGGGA ACAGGGTTCATGGAGGGTGGAGGCGCAAGAAATGTTTCTGCAGCGGCAGTACAGACAAAG GGGACTGGGGATGATGGCTCCCGCAAGCCATTGCCTCCTTGCTGTGTCAAGGCGCAAGCT GCTGTGGCAGAATCTGAGGCCAAGTGCCACGCTACTGTGGTGTCCGGGTGGTTCACAGGA ACCCGCTCGCGCTCTGGTAAACCAAGCAAAGCGCAGTACTTCAACAATCCAATGTGGCCT GGGGAGGCTCATTCGTTGAAAGTAGAGAAGATTTTGTACCAGGGAAAATCGCCATACCAA GAAGTTTTAGTATTCGAGTCTTCAACCTATGGGAATGTCCTTGTGCTTGATGGAATTGTT CAGCTGACTGACAAGGATGAATGTGCATACCAGGAAATGGTTACTCACCTTGCACTGTGC TCAATTCCATCTCCTAAAAATGTTTTGGTTGTCGGAGGTGGTGATGGTGGTGTACTAAGA GAAATAGCCCAGCATGATTCAGTGGAGAGTATAGACATATGTGAGATTGATCAGCTAGTT ATTGATGTTTGTAAAGATTTTTTCCCA
Homology of Contig U35_1502 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g33710.4 | 372 | 1e-104 | protein|spermidine synthase, putative, expressed |
| Brachypodium v1_2 | Bradi1g38687.1 | 385 | 2e-104 | |
| Arabidopsis v10 | AT5G53120.6 | 386 | 2e-67 | | Symbols: SPDS3 | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=386 |