barSeed - Barley Seed Development Database

Probe CUST_36088_PI390587928

Source Contig U35_1514

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36088_PI390587928	Hv_44K_v2	CGCTGCGTTCCTTTTTTGTATTTTATTACTGTATAAAATAATAACGTCGTGGTTGCGCTT	527	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.534	4.788	0.976	0.999	0.661	0.797
Raw	88.246	77.722	13.653	25.530	4.123	5.801

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18081.1	936	2e-24	150 - 209	100	60 / 60	minus	ABC04255
JLOC1	JLOC1_12504.1	932	8e-25	150 - 209	100	60 / 60	minus
Harvest21	ABC04256	810	3e-25	529 - 588	100	60 / 60	plus
Harvest21	ABC04255	866	2e-21	587 - 644	97	58 / 60	plus	ABC04255
Harvest35	U35_1515	878	3e-25	596 - 655	100	60 / 60	plus
Harvest35	U35_1514	625	3e-25	528 - 587	100	60 / 60	plus

Contig Sequence (625 bp)

>U35_1514 625 Hv_44K_v2
ACCACTCTTAAGCGACAAAAGATTGTTGCTACCAGCACCTAAGCTTGAATGGAGGGTGAG
AAGAACTCGTCCGGGGACCTGATGTCCAGCAGCAAGCTGGTCGCGGAGGCCGCCAGGACA
GCCTACGAGAAGAAGAGCGTCGAGGGCATCGACAAGGAAAAGGTAGCCGCCGCCTCCGCC
GATATCCTGGACTCCGCCGCCAAGTACGGCAAGCTAGAGGACAAGCCGGTGGGCCAGTAC
CTCGAGAAGGCCGAGGAGTACCTGAAACAGTACAGCTCCGGCGGTGCAGAGAAGACTGAT
GCACCTGCTGCCGCTGACGCACCGAAGCCGTGGAGGAAGAGAAATCGTCCGACGGGTTCG
GTCTCGACGACGTCATGAAGGGGGCTGCATCGCTATCAGGGAAGAAGGGTGACGGGGAGG
AGAAGGAGAGCGGCGGCGGCGGCTTCATGAAGATGGCTCAGGGGTTCATGAAGTAGAAGT
CGGGTTTCTGCTTCTACTACATGCATGTAGCTCTTGCTAAGTTCGTGCGCTGCGTTCCTT
TTTTGTATTTTATTACTGTATAAAATAATAACGTCGTGGTTGCGCTTAATTATATTATTA
GCTGCTGATAAAAAAAAAAAAAAAA

Homology of Contig U35_1514 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None