barSeed - Barley Seed Development Database

Probe CUST_36087_PI390587928

Source Contig U35_1515

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36087_PI390587928	Hv_44K_v2	GTTTCTTAAGTTATGGATGTCTGTATGATGATCAATAATCCGGTTGTGCTAGCTAGAGGC	692	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18081.1	936	2e-24	53 - 112	100	60 / 60	minus	ABC04255
JLOC1	JLOC1_12504.1	932	8e-25	53 - 112	100	60 / 60	minus
Harvest21	ABC04256	810	3e-25	626 - 685	100	60 / 60	plus
Harvest21	ABC04255	866	3e-25	682 - 741	100	60 / 60	plus	ABC04255
Harvest35	U35_1515	878	3e-25	693 - 752	100	60 / 60	plus

Contig Sequence (878 bp)

>U35_1515 878 Hv_44K_v2
AACTCCCTCTGCTACTAGCCTCACCACTCTTAAGCGACAAAAGATTGTTGCTACCAGCAC
CTAAGCTTGAATGGAGGGTGAGAAGAACTCGTCCGGGGACCTGATGTCCAGCAGCAAGCT
GGTCGCGGAGGCCGCCAGGACAGCCTACGAGAAGAAGAGCGTCGAGGGCATCGACAAGGA
AAAGGTAGCCGCCGCCTCCGCCGATATCCTGGACTCCGCCGCCAAGTACGGCAAGCTAGA
GGACAAGCCGGTGGGCCAGTACCTCGAGAAGGCCGAGGAGTACCTGAAACAGTACAGCTC
CGGCGGTGCAGAGAAGACTGATGCACCTGCTGCCGCTGACGCACCGAAGCCGGATGCACC
CAAGGAGCCAGCGCCTGCGCCTGCACCTGCACCCGCCGTGGAGGAAGAGAAATCGTCCGA
CGGGTTCGGTCTCGACGACGTCATGAAGGGGGCTGCATCGCTGTCAGGGAAGAAGGGTGA
CGGGGAGGAGAAGGAGAGCGGCGGCGGCGGCTTCATGAAGATGGCTCAGGGGTTCATGAA
GTAGAAGTCGGGTTTCTGCTTCTACTACATGCATGTAGCTCTTGCTAAGTTCGTGCGCTG
CGTTCCTTTTTTGTATTTTATTACTGTATAAAATAATAACGTCGTGGTTGCGCTTAATTA
TATTATTAGCTGCTGATATTTGGTTCTGTAAAGTTTCTTAAGTTATGGATGTCTGTATGA
TGATCAATAATCCGGTTGTGCTAGCTAGAGGCATCCTGCTTGCAGGATCTCGGTTGTAAT
CTACTCCCTCCCTTTCTAAATATAAGTCTTTTTAGACGTTTCACTAAAAAAAAAAAAAAA
AAATGTATATAAACATATTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1515 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None