barSeed - Barley Seed Development Database

Probe CUST_36086_PI390587928

Source Contig U35_1516

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36086_PI390587928	Hv_44K_v2	TACAGCACCCTAGCGAAATCAAAGTAGTACAACACAAGGCTCTCTATCAGGAATTCGATC	121	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36459.1	1186	2e-24	113 - 172	100	60 / 60	plus	ABC26057 ABC36625
JLOC1	JLOC1_23474.2	685	8e-25	132 - 191	100	60 / 60	plus
JLOC1	JLOC1_23474.1	693	8e-25	132 - 191	100	60 / 60	plus
Harvest21	ABC04420	610	2e-22	79 - 140	97	60 / 62	plus
Harvest35	U35_1516	644	3e-25	122 - 181	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_1516 644 Hv_44K_v2
TGGAATTCAGTCAAATACAGGCTAACTAATCAAGCTAGAGGTTGCTTGTTTGACCTGACT
GCACCCACGAGGATATCGTGTGGTGTACACTAATCTCTCGCTGCATATACTTGTCCATAA
ATACAGCACCCTAGCGAAATCAAAGTAGTACAACACAAGGCTCTCTATCAGGAATTCGAT
CAGGATCATCGTCCATCAGTCGAGACCCGAGAGCGCGTGGTTCAGTTCAACAGGCTTCGC
AGTACGAGAATGAGCTCCTCGGACGACTCCTGCGGCAAGAAGGCGTCATGGCCGGAGCTG
GTTGGGATGTCCATCGAGGAGGCGAAGAAGATCATCATGAAGGACAGGCCAGACGTGAAG
ATCATCGAGGTCTTCCCAGTCGGCACCGCGGTCACCGAGGACTTGAGGTTCGACCGTGTC
CGCATCTTCGTCAACACAGTTGCGGAGATCCCCCGCATTGGCTAGCTTCGCTTCTTGCTC
GATTCGGTTGACGTGTGTTTGTGTTTGTGTTTGTTATATTCCTGAATAAACCATAGCTGG
ATGTATGCATAATACTCCAGCTATGTCGATCGCCATGTACGAATTAATAATTAAAGTTGA
TCGCAGGCTTGCAGCCTTGACATGTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None