barSeed - Barley Seed Development Database

Probe CUST_36085_PI390587928

Source Contig U35_1517

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36085_PI390587928	Hv_44K_v2	CGAATTAATAATTAAAGTTGATCGCAGGCTTGCAGCCTTGACATGTTGATCTTTATTTCA	431	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36459.3	541	2e-24	424 - 483	100	60 / 60	plus	ABC36625
MLOC	MLOC_36459.1	1186	2e-24	655 - 714	100	60 / 60	plus	ABC26057 ABC36625
JLOC1	JLOC1_23474.2	685	8e-25	582 - 641	100	60 / 60	plus
JLOC1	JLOC1_23474.1	693	8e-25	590 - 649	100	60 / 60	plus
Harvest21	ABC36625	466	2e-22	17 - 71	100	55 / 55	minus	ABC36625
Harvest21	ABC04420	610	2e-22	539 - 593	100	55 / 55	plus
Harvest21	ABC04421	672	8e-21	575 - 626	100	52 / 52	plus
Harvest35	U35_1517	540	3e-25	432 - 491	100	60 / 60	plus
Harvest35	U35_1518	564	2e-22	491 - 545	100	55 / 55	plus
Harvest35	U35_35477	412	2e-21	343 - 395	100	53 / 53	plus

Contig Sequence (540 bp)

>U35_1517 540 Hv_44K_v2
GGGAGTACAACACAAGGCTCTGCACGAGGAGGAATTCGATCAGGATCATCGTCCATCAGT
CGAGACCCGAGAGCGCGTGGTTCAGTTCAACAGGTACGAGAATGAGCTCCTCGGACGACT
CCTGCGGCAAGAAGGCGTCATGGCCGGAGCTGGTTGGGATGTCCATCGAGGAGGCGAAGA
AGATCATCATGAAGGACAGGCCAGACGTGAAGATCATCGAGGTCTTCCCAGTCGGCACCG
CGGTCACCGAGGACTTGAGGTTCGACCGTGTCCGCATCTTCGTCAACACAGTTGCGGAGA
TCCCCCGCATTGGCTAGCTTCGCTTCTTGCTCGATTCGGTTGACGTGTGTTTGTGTTTGT
GTTTGTTATATTCCTGAATAAACCATAGCTGGATGTATGCATAATACTCCAGCTATGTCG
ATCGCCATGTACGAATTAATAATTAAAGTTGATCGCAGGCTTGCAGCCTTGACATGTTGA
TCTTTATTTCAAAAAAAAAAAAAAAATTGGTTGAAACCATTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1517 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None