barSeed - Barley Seed Development Database

Probe CUST_36084_PI390587928

Source Contig U35_1518

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36084_PI390587928	Hv_44K_v2	TTAGCTGGCTATTTTGCTTTCTATACCCTATAAGCTTCGCAGTACGAGAATGAGCTCCTC	111	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36459.1	1186	2e-24	276 - 335	100	60 / 60	plus	ABC26057 ABC36625
Harvest21	ABC36625	466	1e-23	391 - 450	98	59 / 60	minus	ABC36625
Harvest21	ABC36624	226	1e-23	20 - 79	98	59 / 60	plus
Harvest35	U35_1518	564	3e-25	112 - 171	100	60 / 60	plus

Contig Sequence (564 bp)

>U35_1518 564 Hv_44K_v2
ATTCGATCAGGATCATCGTCCATCAGTCGAGACCCGAGAGCGCGTGGTTCAGTTCAACAG
GGTGAGTACTCACTACTCAGTTACCATGCATGTCTCCATTTTGGTGAATCTTTAGCTGGC
TATTTTGCTTTCTATACCCTATAAGCTTCGCAGTACGAGAATGAGCTCCTCGGACGACTC
CTGCGGCAAGAAGGCGTCATGGCCGGAGCTGGTTGGGATGTCCATCGAGGAGGCGAAGAA
GATCATCATGAAGGACAGGCCAGACGTGAAGATCATCGAGGTCTTCCCAGTCGGCACCGC
GGTCACCGAGGACTTGAGGTTCGACCGTGTCCGCATCTTCGTCAACACAGTTGCGGAGAT
CCCCCGCATTGGCTAGCTTCGCTTCTTGCTCGATTCGGTTGACGTGTGTTTGTGTTTGTG
TTTGTTATATTCCTGAATAAACCATAGCTGGATGTATGCATAATACTCCAGCTATGTCGA
TCGCCATGTACGAATTAATAATTAAAGTTGATCGCAGGCTTGCAGCCTTGACATGTTGAT
CTTTAACAAAAAAAAAAAAAAAAA

Homology of Contig U35_1518 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None