barSeed - Barley Seed Development Database

Probe CUST_36080_PI390587928

Source Contig U35_1522

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36080_PI390587928	Hv_44K_v2	TCAAAAGGGAGATAGAGCTTCAGAGTGACAACATTGATCTCAGAACCAAGATTGCGGAGG	648	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.405	4.116	1.517	0.842	0.485	0.749
Raw	61.631	93.270	29.482	28.047	2.957	8.888

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57890.1	1304	2e-24	752 - 811	100	60 / 60	plus	ABC23582
JLOC1	JLOC1_37592.2	1510	8e-25	944 - 1003	100	60 / 60	plus
JLOC1	JLOC1_37592.1	1318	8e-25	752 - 811	100	60 / 60	plus
Harvest21	ABC31899	669	3e-25	528 - 587	100	60 / 60	plus
Harvest21	ABC03832	685	3e-25	560 - 619	100	60 / 60	plus
Harvest35	U35_36679	669	3e-25	528 - 587	100	60 / 60	plus
Harvest35	U35_1522	774	3e-25	649 - 708	100	60 / 60	plus

Contig Sequence (774 bp)

>U35_1522 774 Hv_44K_v2
CAACTCGTCTCTTACTTTACCTCCTAGAGGAAAAACAGCTGGAGCCCCTCATTTTTCTTG
CCTCTGGCTTGGGCCCTATAAACCAAAGGGAGGAAGGACAGCTAGCTGCATCAGAGAGCT
CCATACCTTGTCCATCGTCTGCTCTTCTGCCTAGCTAGGGCTAACACCAAGAAGCGGCCG
AGATGGGGAGGGGAAGGATTGAGATCAAGAGGATTGAGAATACCACTAGCCGCCAGGTGA
CCTTCTGCAAGCGCCGGAACGGGCTCTTGAAGAAGGCCTACGAGCTCTCCGTCCTGTGCG
ACGCCGAGGTGGCGCTCATCGTCTTTTCCAGCCGCGGCCGCCTCTATGAGTACTCCAACA
ACAGTGTCAAGGCTACAATTGAGAGGTACAAGAAGGCACATGCTTGTGGCTCAACCTCTG
GGGCACCTCTCATAGAAGTCAATGCTCAGCAATACTACCAGCAAGAAACTGCAAAGATGC
GCCACCAGATCCAGATGCTGCAAAACACTAACAAGCACTTGGTTGGTGATTCTGTTGGGA
ACCTATCACTCAAGGAGCTGAAGCAGCTCGAAAGCCGCCTCGAGAAAGGCATTGCAAAGA
TCAGGGCCAGGAAGAATGAGCTCCTATCTTGTGAGATCAACTACATGGTCAAAAGGGAGA
TAGAGCTTCAGAGTGACAACATTGATCTCAGAACCAAGATTGCGGAGGGGGAGCAGCAGT
TGCAGAAGGTCACTATCGCCAGGCCCTCGGCGGCCCCGGAGCTGAACCCTTTCA

Homology of Contig U35_1522 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g10540.3	271	4e-116	protein\|OsMADS13 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi4g40350.1	252	8e-128
Arabidopsis v10	AT4G18960.1	252	6e-79	\| Symbols: AG \| K-box region and MADS-box transcription factor family protein \| chr4:10383917-10388272 FORWARD LENGTH=252