barSeed - Barley Seed Development Database

Probe CUST_3607_PI390587928

Source Contig U35_28112

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3607_PI390587928	Hv_44K_v2	AGAACAAGAGGATCGCGAAATCTGTCGGCGATTGGTACTTTGGCCGGGCCGAAGTGAAGG	546	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.399	3.433	1.291	0.649	0.179	0.167
Raw	175.343	216.728	69.037	54.657	3.570	4.358

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26912.5	1606	2e-24	1316 - 1375	100	60 / 60	plus	None
MLOC	MLOC_26912.6	1974	2e-24	218 - 277	100	60 / 60	minus	None
MLOC	MLOC_26912.7	1577	2e-24	214 - 273	100	60 / 60	minus	None
MLOC	MLOC_26912.3	1884	2e-24	233 - 292	100	60 / 60	minus	None
MLOC	MLOC_26912.4	1904	2e-24	233 - 292	100	60 / 60	minus	None
MLOC	MLOC_26912.2	1958	2e-24	363 - 422	100	60 / 60	minus	None
MLOC	MLOC_26912.1	1771	2e-24	363 - 422	100	60 / 60	minus	None
JLOC1	JLOC1_18234.3	1850	8e-25	1400 - 1459	100	60 / 60	plus
JLOC1	JLOC1_18234.2	1698	8e-25	1248 - 1307	100	60 / 60	plus
JLOC1	JLOC1_18234.1	1722	8e-25	1272 - 1331	100	60 / 60	plus
Harvest21	ABC26761	642	3e-25	547 - 606	100	60 / 60	plus
Harvest35	U35_28112	642	3e-25	547 - 606	100	60 / 60	plus
Harvest35	U35_17429	1775	6e-22	1658 - 1711	100	54 / 54	minus

Contig Sequence (642 bp)

>U35_28112 642 Hv_44K_v2
GCTTGCTTCTACTCAGCAGCCCATTGATACGATGGTGAAGACGAGGATCGGTGCCGTCGG
GCCTTGGGCGCTTCTCGCTCTGGTCCTCCTCCTCGCCGGCAGCTGCGCCTGCGTGCAGGC
GGCGGGCGAGCAGAAGAACGGCGGTGGCAGAAGGAGGAGGACGCATCGACGGTCGGCGGC
GGCCGTCGCGGGCATGATGGTGCCTATCACCTTCCTCAACGCCTCCGTCGAGAAGGGCGC
CGTGTGCATGGATGGGACGCCGGCGGCTTACCACCTGGACCCGGGCTCCGGGGCAGGGAA
CAAGAGCTGGATCGTCAACCTCGAGGGAGGCGGGTGGTGCAACAACGCGAGGACGTGCAA
GTTCCGGACAAGGAGCCGCCATGGCTCCTCCAACTTCATGGAGCGGCAGATAGCCTTCAC
CGGCATCATGAGCGCCAGCCCCGCCGACAATCCTGATTTCCAAGAGCAACGGGCTCTTCA
TAAACTCGTGCTTCTCCCACTGCCAGTCCGAACTGCCAGCCACCTGGAATAGCACACCTG
CCATACAGAACAAGAGGATCGCGAAATCTGTCGGCGATTGGTACTTTGGCCGGGCCGAAG
TGAAGGCGATCGATTGCCCATACCCCTGCGACAAGACATGCC

Homology of Contig U35_28112 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g12047.1	316	4e-54
Arabidopsis v10	None