barSeed - Barley Seed Development Database

Probe CUST_36079_PI390587928

Source Contig U35_1523

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36079_PI390587928	Hv_44K_v2	GCATATATCTATGTAGGAGTACCTTTTTCTAAATGCAATACTACTGGTGGCGATTTCATA	1064	GeneList: grey60 MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.703	4.598	1.245	0.715	0.168	0.225
Raw	463.444	755.299	170.393	166.667	12.663	19.541

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57700.1	1213	2e-24	1153 - 1212	100	60 / 60	plus	ABC03831 ABC11029
JLOC1	JLOC1_37431.1	1310	8e-25	1176 - 1235	100	60 / 60	plus
Harvest21	ABC03831	1141	3e-25	1065 - 1124	100	60 / 60	plus	ABC03831
Harvest35	U35_1523	1141	3e-25	1065 - 1124	100	60 / 60	plus

Contig Sequence (1141 bp)

>U35_1523 1141 Hv_44K_v2
GTCTATCCATCTCATTTCTCTCTAGCGCCCACGAAAACAAACATGCAGATACTCAACGAG
AAGCTGGCTACACCATCCACAGGCCTAATGGTGAAGGAGTCCGTGTCCCCGGGCTTGGGA
TCGGCGGGTGCTGCTGCTGAGAAGATGGGGAGAGGGAGGATCGAGATCAAGCGCATCGAG
AACACGACGAACCGGCAGGTCACCTTCTGCAAGCGCCGCAACGGACTCCTGAAGAAGGCG
TACGAGCTCTCGGTGCTCTGCGACGCTGAGGTCGCGCTCGTCGTCTTTTCCAGCCGCGGG
CGCCTCTATGAGTACTCCAACAACAGCGTCAAGGCAACCATTGAGAGATACAAGAAGGCA
ACTAGTGACACCTCCAGCGCTGGTACAGTCGCAGAGATCAATGCCCAGCACTACCAGCAG
GAATCTGCAAAGCTGAGGCAACAGATAACCACCTTGCAGAACTCCAACAGGACTCTAATA
GGCGATACCATGGCTACCATGAGCCACAGAGACCTAAAGCAGCTGGAGGGAAGGCTGGAC
AAAGGCCTAGGAAAGATTAGAGCAAGAAAGAATGAATTACTAAGCGCTGAAATTGAGTAC
ATGCAGAGAAGGGAAATGGAGCTGCAGAATAACAACTTCTACTTGAGGGAAAAAGTCGCT
GAGACTGAAAGGGGGCAACAGCAGACGTTGAACATGATGGGGGCGGCTTCCACATCTAAT
GAGTACGAGCAAAATATGATACAATGTGATCCGAGAACCTTCCTGCAGTTCAACATCATG
CAGCAGCCTCAGTACTACACCCAGCAGGAGGATAGAAAAACCTTCAACTCAGTTGAGAGG
TGATGGATGCATCCATGCATAGCTGTGTCTCTCATTTACTTCAAGTGAGATTGAAGCTAT
ATCCGTGCACTATAACTAGAACTTCCTTGAATGCATGTGTGTATTTCTATACACGCAAAA
TCAATTTTATCCCATAATTAAGGCTTGGCCACACCAATGCAATGTATCCATATGTATTGC
GATGATACGACTTAACTCTTTCAGTGCAACGCACGTACTTCTTCGCATATATCTATGTAG
GAGTACCTTTTTCTAAATGCAATACTACTGGTGGCGATTTCATATAAAAAAAAAAAAAAA
A

Homology of Contig U35_1523 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g11414.1	289	2e-135	protein\|OsMADS58 - MADS-box family gene with MIKCc type-box, expressed
Brachypodium v1_2	Bradi2g32910.1	268	1e-164
Arabidopsis v10	AT4G18960.1	252	6e-90	\| Symbols: AG \| K-box region and MADS-box transcription factor family protein \| chr4:10383917-10388272 FORWARD LENGTH=252