barSeed - Barley Seed Development Database

Probe CUST_36076_PI390587928

Source Contig U35_1526

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36076_PI390587928	Hv_44K_v2	TTTGATCTACTCAAGGGCCAACTGCTAGATTCTGGAATTACTACTGCTGATATTTTGAAG	863	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.494	1.044	1.446	0.909	0.593	0.405
Raw	341.579	340.048	457.035	410.157	102.357	77.779

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368865	2908	2e-24	829 - 888	100	60 / 60	plus	ABC08240 ABC08241
MLOC	MLOC_74063.3	3619	2e-24	1174 - 1233	100	60 / 60	plus	None
MLOC	MLOC_74063.1	2459	2e-24	971 - 1030	100	60 / 60	plus	None
MLOC	MLOC_74063.4	1664	2e-24	262 - 321	100	60 / 60	plus	None
MLOC	MLOC_74063.2	2331	2e-24	929 - 988	100	60 / 60	plus	None
JLOC1	JLOC1_49343.1	2347	8e-25	945 - 1004	100	60 / 60	plus
Harvest21	ABC16435	798	1e-23	736 - 795	98	59 / 60	plus
Harvest21	ABC16436	610	8e-21	559 - 610	100	52 / 52	plus
Harvest35	U35_1526	926	3e-25	864 - 923	100	60 / 60	plus

Contig Sequence (926 bp)

>U35_1526 926 Hv_44K_v2
GGTCCGGAATTCCTCGTTCACTGTTGGCCTACTGCACTAGGAGAGAGGTCGCAGACGGAA
CCCAACCCTCCCCCAAGAGAAGAAGGAAAAAAAAAGCTCGGATTCCTCCGCGATTTCCTC
CCCGGCGCCCCGCCGATTCCCTGTCGATCGAGCTGCCGCGGTGCCTTGGTCGGGTTCGGG
ACCCTCAGCCATGACGACAGACCAGCCAGTGATCAGCCTGCGCCCCGGCGGCGGCGGCGG
CGGGCCACGCGGCGGTCGCCTCTTTGCCCCCGCCTTCGCCGTCGCCGCCTCCGGCTCCGG
CGACTTCCTCCGCCCGCACGGCGGCGGCGCCTCCGGCGTCTCCAGGATTGGTGACTTGCA
TTTTGAGACACGTGAGCGTATTCGTTATTCAAGAGATCAACTTCTTGACCTGCGAAAGAT
TACCGATATATCCGAGCAAATCTTGAGGCTTCAGCAGGAAATTGAAGCAGAGCTTCATGG
TGACGATCAGAGCTGGGTTCGCAACGATTCGAATGTGCAGTTGCAGACACAGACACAGAC
ACGTACAAGCTCAAAACCGGTTTACTGAGACAGATAACCGTGACTGGCGTGCACGCACAG
AGAAACCTCCAGCACCAGCAGTTCAGGAAGAGAAGTCTTGGGACAACATTCGTGAGGTAA
AAGAACAGTACAATGCAAGTGGCAGGCAGCAAGAGCAGTTTAACAGGCAAGATCAATCGA
GCTCCCAGAAAGCTCAGGCTGGCCCCCCTCCTGCTCTTATCAAGGCTGACGTACCTTGGT
CAGCCCGAAGAGGCAATCTCTCAGAGAAAGACAGAGTCCTGAAAACAGTGAAAGGTATAC
TAAACAAACTGACGCCAGAGAAATTTGATCTACTCAAGGGCCAACTGCTAGATTCTGGAA
TTACTACTGCTGATATTTTGAAGGAT

Homology of Contig U35_1526 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42140.1	794	4e-80	protein\|eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed
Brachypodium v1_2	Bradi5g14687.1	793	1e-96
Arabidopsis v10	AT5G57870.1	780	1e-55	\| Symbols: eIFiso4G1 \| MIF4G domain-containing protein / MA3 domain-containing protein \| chr5:23439755-23443433 FORWARD LENGTH=780