barSeed - Barley Seed Development Database

Probe CUST_36064_PI390587928

Source Contig U35_1538

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36064_PI390587928	Hv_44K_v2	GTGTTACTTCCTCCATTGTATGCAAAGATGCTTTGAATATACGGATTTGCAATTCTCGTC	675	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.973	3.223	0.516	0.525	0.963	1.023
Raw	50.106	38.542	3.293	6.340	3.288	4.936

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13520.1	891	7e-23	813 - 869	100	57 / 57	plus	ABC04520
JLOC1	JLOC1_9168.1	1182	4e-23	840 - 896	100	57 / 57	plus
Harvest21	ABC04520	751	1e-23	673 - 729	100	57 / 57	plus	ABC04520
Harvest35	U35_1538	814	3e-25	676 - 735	100	60 / 60	plus

Contig Sequence (814 bp)

>U35_1538 814 Hv_44K_v2
AGAAAGAAGATAGAACACAGACCACCACCTACGTGCTCCCACGCTCTACCATCAAACTTC
AAAAATGTCGGGTTGGTTCGGGGGCAAGACGACGGACGCCAAGGCCGACGAGGCCGCCAA
GACGGGGCCGTCCGTCCAGGACCGCGCCATCGAGGCGAAAGACCAGACCATCAGCTTCAT
CGGCGAGAAAAGCGAGGCCGTCACGAAGGCGGCCTCCGACACCGCCGATGCGGCCATGAA
GATGGGGGGAGACGCCATGGGGAAGGTCTCCGAGACGGGGCAGGCCATCACGGACCGCGC
CATCGAGAGCAAAGACCAGACGTTCGGCTTCATCGGCGAGAAGGCCGAGGCTGCCAAGAA
GATGGCCGTCGACACCGGCGACGCCGCCAAGCAGAAGTCCGCCGAGGCCGCGAAGTGTGT
CGAGGAGACCGCGGCGCAGTTCACCGGGGAACCCGCCGCCCCCAAGGAGCCCGCCGGCAA
CATGTTCCAGCAGGCTGGCGGGCAGGTGATGGGCGCCGCTACGGGCGCCAGGGACGCCGT
CATGAACACGCTCGGGATGGGAGGAGACAAAGCCGACGCCGGCAGCGCCAAATGAAGACC
GGAGCCCTCATTTCGTTTCGTTATTCGTGTTGCTTTATTTTCCGTTCCAAGAAACTGATT
TCTAGGCATGCGTCGGTGTTACTTCCTCCATTGTATGCAAAGATGCTTTGAATATACGGA
TTTGCAATTCTCGTCAAAAAAAAAAAAAAAAAAAAAACTGATGAATATATATTCTTCACA
TTTCAGTTTTTTTTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1538 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None