barSeed - Barley Seed Development Database

Probe CUST_36060_PI390587928

Source Contig U35_1542

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_36060_PI390587928	Hv_44K_v2	AATAGATCGACTCAAATTTGGGTGAGAGCTGCACATAGTGGCTCAACTTGTGTCAAAAAA	1788	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.169	1.365	1.335	1.079	0.397	0.387
Raw	458.559	849.945	711.329	890.378	116.627	122.676

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55881.1	603	7e-23	47 - 103	100	57 / 57	minus	ABC04263
JLOC1	JLOC1_36088.2	1964	4e-23	1865 - 1921	100	57 / 57	plus
JLOC1	JLOC1_36088.1	1961	4e-23	1862 - 1918	100	57 / 57	plus
Harvest21	ABC04263	1858	3e-25	1789 - 1848	100	60 / 60	plus	ABC04263
Harvest35	U35_1542	1858	3e-25	1789 - 1848	100	60 / 60	plus

Contig Sequence (1858 bp)

>U35_1542 1858 Hv_44K_v2
CGCATCTAAACCCTGCCCCTCTCTTTTTTTCTGTCTCTCTCCGAGGTTTTTAGGGTTTCT
CATCCGCATCAGCCGCCGCCGGAACCAGGGAGGCGGGGATACGTCGCGATGCAGCCAACA
TACCAGCCGCCAATGAACGGCCAGCATGCGCCTCAGTCGCAGGCCTCTGGGGCTCCGCCT
CCTCCTCCGCAGCAGGCCCCCCCGCCGCAGCAGTACTACCAGGCGCCGCCGCAGTACTAC
CAGCAGGGACCCCCGCCGGCGATGTGGGGCCATCCGCAGCAGCATATGCCTCCGCAGTAC
GCGCCCCCGCCGCAGCAGTACGCGCCTCAGCCTCCTCAGCAGTACGCGCCGCCACCGCAG
CATTACGCGCCGCCTCCGCCGCAGTACGGAGCGCAGATGGCTGGCGGGCCTCCTCCCGGA
GGCGAGGATATCAGGTCGCTGTGGATTGGAGATCTTCAGTACTGGATGGATGAGACCTAC
CTCTACAACGCCTTTGCGCCTGTGGGGCCGCAGCAGGTTACCTCAGTGAAAATTATCCGC
AACAAACACACCGGGCAGCCTGAGGGTTATGGTTTTATTGAATTTCAATCTCGAGCTGCT
GCGGAATATGCTCTGGGCACCTTTAATGGGCAGATGATGCCTAATGTTGAACAAGTTTTT
AAGCTAAACTGGGCTTCTTGTAGTGCTGGGGACAAGCGGGGTGACGATGGTTCTGATCAC
ACAATATTTGTTGGTGATTTGGCTGCCGATGTTACTGATGCCATGTTGGAAGAGATATTC
AAAGCCACCTACCCATCAGTTAAAGGTGCTAATGTTGTTACTGACAGGGCCACTGGTCGC
TCCAAAGGATATGGTTTTGTACGCTTTGGAGATCTAAATGAGCAGACACGTGCTATGACT
GAGATGAATGGAGTGCCATTGTCTACGAGACAAATGAGGATTGGGCCTGCAGCTAACAAG
AAGAATATGGGTGCTCAGCAGACATACTCAACTAATGCAGGGTACCAGAGCTCTCAAGTA
AATGAGGCGGCGAATGATCCCAACAATACTACAATCTTTGTGGGCGGGTTAGATTCCAAT
ATAGATGAGAACTATCTAAGGCAAGTTTTTACTCCATATGGCGAAGTTGGTTATGTGAAG
ATTCCTGTAGGCAAGCGTTGTGGATTTGTCCAATTTACCAGCAGGGCGTGCGCTGAGCAG
GCCATCAGTGCGCTGAATGGGTCTCAGATTGGTAGTTCCAATGTTCGTCTTTCATGGGGC
CGTAGCCAAAACAAACAGCCTCCCCAGCAGGATGCAAACCAGGGTAATGGCAACAGCTAC
TATGGATATCAACAGGGTCCTGATGCTTACTATGGTGCACCCAATGCGCAAGATCCTAGC
ATGCAAAACTATGGATACTCTGGTTATGGCAGTTACGATCAGCAACAACAGCCACCACAG
CAGCAGCAACCTCCACAGCAGCAACCACCACAGCAGCAACAGCAGCAGGCCCCCCAGCAG
TGACCATCGAGGCGATGGAGCTCAATCAGAGATTCAGAGCTGCATGAACTGAATGCTACC
GCGTTATGAGTCATCGTATAGGTGTCCTTGTTTTGTAAGATGGGTCGTATCTAGTAGTAC
TTTGACTGGTGGGCAGTAACTCTAGTTCTATTCAGTGCTTCTCTTGGTTTTAAAATTATC
GAACTATGTCAGTTACTGAGTTAAGCTTTTAATGTTATTTCTAAAAAAAAAAATGCTTGT
TTTTAAAAAAAAAAAAAAAAGCGAGGCCTATGGTGCAACTGTTTGGTTAATAGATCGACT
CAAATTTGGGTGAGAGCTGCACATAGTGGCTCAACTTGTGTCAAAAAAAAAAAAAAAA

Homology of Contig U35_1542 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g33330.1	490	7e-171	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi1g26210.1	468	0.0
Arabidopsis v10	AT1G11650.2	405	3e-118	\| Symbols: ATRBP45B, RBP45B \| RNA-binding (RRM/RBD/RNP motifs) family protein \| chr1:3914895-3917941 FORWARD LENGTH=405